_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-38
 Query name: gi|212286165|ref|NP_001131075.1| selenoprotein O [Canis lupus familiaris]
 Query range: 16-513  (total 513)

 Target: /data/www-rg/seblastian_results/39476749/tempfiles/temptarget.fasta
 Chromosome: KZ836293.1:subseq_62495,112730_ Strand: -
 Positions:
 -Exon 1  56936        57171
 -Exon 2  55494        55674
 -Exon 3  54705        54835
 -Exon 4  53988        54268
 -Exon 5  51602        51752
 -Exon 6  50578        50763
 -Exon 7  50276        50432
 -Exon 8  50000        50170

 Redox box: YES

Query   DAAVTCVCDFRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDVFYDGNPKYEKCTVVLRIASTFLR <---Intron---> FGSFE
        |   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1261bp   > |||||
Target  DGTTTCVFDFRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVVRDVFYDGNPKYEKCTVVLRIASTFLR                FGSFE
        ggaaatgtgtacgggcagcctaacgtctaggatccgacaacgggtgatctaggcggttggacatgataggccagtatca                tgttg
        agcccgttatgacaggattgcgtgattggacttatgtcccgcgcgtccaccttgattaagacaaaagctttgtcccttg                tgcta
        tcaactgttcagccccacgggcccgcgccacgctgccccggcgcccacgcactacgctcttaatggcgtggtatctta                gcactg
                                                                                                            

Query   IFKPADEHTGREGPSVGRNDIRVQMLDYVIGTFYPEIQAAHTEDRVQRNAAFFRE <---Intron---> VTRRTARMVAEWQCVGFCHGVLNTDNMSI
        ||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| <   658bp    > |||||||||||||||||||||||||||||
Target  IFKSADEHTGREGPSVGRNDIRVQMLDYVISTFYPEIQAAHAEDRVQRNAAFFRE                VTRRTARMVAEWQCVGFCHGVLNTDNMSI
        atatgggcagcggcaggaagacgcacgtgaaattcgacggcgggcgcaaggttcg                gaccagcagggtctggttcggcaagaaaa
        ttaccaaacggagcgtggaatgtattaattgctacataccacaagtagaccttga                tcggccgttcagagtgtgagttacaatgt
        tcgcatgcagcggctggacccacggtctgccgtttgcgcgccgccgggtctccgg                gctcgcgggcgggtgcccccgccaccgct
                                                                                                            

Query   VGLTIDYGPFGFLDR <---Intron---> YDPDHVCNASDNAGRYTYSKQPEVCKWNLQKLLEALEPELPRELGEAILAEEFDSEFRRHYLQKMRRKL
        ||||||||||||||| <   436bp    > |||||||||||||||| |||||||||||||||/|||||||||| |||||||||| |||/||||||||||
Target  VGLTIDYGPFGFLDR                YDPDHVCNASDNAGRYAYSKQPEVCKWNLQKLVEALEPELPRERGEAILAEEFDPEFRQHYLQKMRRKL
        ggcaagtgctgtcga                tgcgcgtagtgaggctgtaaccggtataccacgggcgcgcccgcgggacgggtgcgtccctccaacaac
        tgtctaagctgttag                aacaatgaccaacggacagaacatgagataattactacatcgaggacttcaatacatgaaataatggat
        ggcccccgccccgc                gtctccgcccccctactgccagcatcggcggggggcggcggctggtgccgcggccggccgccggggcggg
                                                                                                            

Query   GLVRTELDDDGALVAKLLETMHLTG <---Intron---> ADFTNTFYVLSSFPVGPEALGLPEFLAALTAQCASLEELKLAFRPQMDPR <---Intr
        |||  |||/|||||||||||||||| <   2235bp   > ||||||||/|||||||||/||||||||||||||||||||||||||||||| <   838b
Target  GLVHAELDEDGALVAKLLETMHLTG                ADFTNTFYLLSSFPVGPESLGLPEFLAALTAQCASLEELKLAFRPQMDPR         
        gcgcggcgggggcggaccgaaccag                ggtaaatttcattcggcgtcgccgtcggcagctgtcggcacgtcccagcc         
        gttacataaagcttcattactatc                gcatcactattgctctgcactgtcattcctccagcctaatatctgcatacg         
        cggccggcgcagggcgcggcgcgt                gcccaccccggcccatgagcgcgtgcgcggtagtccaggggcccacggtc          
                                                                                                            

Query   on---> QLSMMLMLAQSNPQLFALIGTRANVTKELERVEQQSRLEQLSPAELLSKNQGHWADWLQQYR <---Intron---> ARLEKDREGVSDEEA
        p    > |||||||||||||||||||||||||||||||||| |||||||||||||||/||||||||/|| <   145bp    >  |||||||||||//|
Target         QLSMMLMLAQSNPQLFALIGTRANVTKELERVEQHSRLEQLSPAELLSKNRGHWADWLQEYR                TRLEKDREGVSDKDA
               cctaacacgctaccctgcagacgagaagcgcggcctctgccacggccaaaagctggtccgta                accgagagggagagg
               atctttttcacacattcttgcgcatcaatagtaaacgtaatgccattgaaggagcagtaaag                cgtaaagagtgaaac
              ggcggggggagcctgccaccccggccggggatgggtggggggcgtgggcgcgccgtcgcggc                acggggcggcctcgtc
                                                                                                            

Query   WQAERMRVMHANNPKYVLRNYIAQNAIEAAENGDFSE <---Intron---> VRRVLELLETPYHRAEEAARVPEATEPEGASGADSGGHSYSSKPPLW
        ||||  ||||||||||||||||||||||||||||||| <   105bp    > |||||/||||||||  ||  |||||||||| ||||||||||||||||
Target  WQAEHTRVMHANNPKYVLRNYIAQNAIEAAENGDFSE                VRRVLKLLETPYHRDGEATEVPEATEPEGAGGADSGGHSYSSKPPLW
        tcggcacgacgaacatgccatagcagaggggaggttg                gccgcaccgactcaggggaggcggagcgggggggaggcttaaaccct
        gacaacgttacaacaattgaatcaactaccaagatca                tggttattaccaagagaccatcaccacagcggcagggacaggacctg
        ggtgcgccgtccccgccggcctcgtccgtcgcaccag                ggggggagactccgtggccgcggctgcggtcgactggcccccgcagg
                                                                                                            

Query   AAELCVTUSS
        ||||||||||
Target  AAELCVTUSS
        gggctgattt
        ccatgtcgcc
        gcagcggacg
               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 92 ; UGA-SECIS: 98

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = KZ836293.1:subseq_62495,112730_ Strand = - Positions = 49907 - 49837
 Found by:  Infernal (score=17.4) Covels (score=22.33)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -15.97

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((({{((---(...{[[{((({((((((..................))))))})))}]]}----..-)))}})))..
 target  CCCUGCCUC---UCCAUGACGGCCGAGACGUCCAGUCAGGCCCUGACCCGUCUCUGUCUGAC----GU-AGACUCAGCA
                         ****           ^^                         ****