_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:3     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-37
 Query name: gi|1012197853|ref|XP_016011848.1| PREDICTED: selenoprotein K [Rousettus aegyptiacus]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/231790556/tempfiles/temptarget.fasta
 Chromosome: KZ836306.1:subseq_44223088,100242_ Strand: -
 Positions:
 -Exon 1  49961        50242

 Redox box: no

Query   MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRGYGNSSDSRYDDGRGPPGNPPRRMGRINHLRGPNPPPMAGGUGR
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||/||||||||||
Target  MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRGYGNSSDSRYDDGRGPPGNPPRRMGRINHLRGPSPPPMAGGUGR
        agtatagcgtgacactctatttaagtttgaggtggtttaaccccggaaaagtgattgtatgggagccgaccaaagcaacccgcacccagggtga
        ttatcagattagggaccggtcttcattggtcattttttacttaaataagggagaccacgaaagggccgaccggtggtaatggcgccctcggggg
        gtccgtaaagccgtgcagaatgaatccgaaagtgtgtcgtgtgatgagaaataccttcatttaagaacctcaagtatttctcttttagttaaag
                                                                                                   *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 129 ; UGA-SECIS: 135

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = KZ836306.1:subseq_44223088,100242_ Strand = - Positions = 49831 - 49754
 Found by:  Infernal (score=19.39) Covels (score=37.35) SECISearch1.0 (pattern=default)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -12.33

         ..(((((((.......(((((((((((((((.................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...({({(((--....{[[((((((((((((.................))))))))))))]]}.....-..)))})})...
 target  UCCUCACAGA--CAAAUGAGGUCGUGCUGGGAAUUCCCUCCCCAGGGAUCUGGCAUGACUGACAUGCA-GUUCUAUAAAUG
                         ****           ^^                          ****