_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:3     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-09
 Query name: gi|961718760|ref|XP_014919607.1| PREDICTED: LOW QUALITY PROTEIN: ethanolaminephosphotransferase 1 [Acinonyx jubatus]
 Query range: 1-396  (total 396)

 Target: /data/www-rg/seblastian_results/437886221/tempfiles/temptarget.fasta
 Chromosome: KZ836237.1:subseq_21593854,100272_ Strand: +
 Positions:
 -Exon 1  26054        26110
 -Exon 2  43092        43160
 -Exon 3  43608        43716
 -Exon 4  45667        45741
 -Exon 5  50010        50272
 -Exon 6  51400        51508
 -Exon 7  56772        56820
 -Exon 8  58196        58376
 -Exon 9  59666        59848
 -Exon 10 62115        62210

 Redox box: no

Query   MAGYEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYVMHPFWNTIVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLM
        ||||||||||||||||||| <  16981bp   > ||||||||||||/|||||||||| <   447bp    > ||||||||||||||||||||||||||
Target  MAGYEYVSPEQLAGFDKYK                YSAVDTNPLSLYIMHPFWNTIVK                VFPTWLAPNLITFSGFLLVVFNFLLM
        aggtgtgacgccggtgata                tagggaacctctaaccttaaaga                gtcatcgcacaattgtccggtatcca
        tcgaaatgcaatcgtaaaa                agctacactctattactgactta                ttccgtccattctcgttttttatttt
        gttcacgcggggtcttgcg                cttgtctactgtcgtatgctaag                atttggtatgacctctggtacttatg
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PGHKHVPDWVWIVVGILNFIAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        ||||||||||| <   1950bp   > ||/|||||||||||||||||||||| <   4268bp   > ||||||||||||||||||||||||||||||||
Target  AYFDPDFYASA                PGYKHVPDWVWIVVGILNFIAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        gttgcgttgtg                cgtacgcgtgtagggacatagtacg                ggggacgcaaataactggctgcgcgatttgtt
        catacatacc                ccgaaatcagtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtat
        actttcttta                aatcgtcttgtgtagcccccaccta                ttgtagacgactccctaggttctcgttgattct
                                                                                                            

Query   VVTVYSIFGRGPSGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAIVGVEAWYEPFLFNFLYRD
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1127bp   > |||||||||||||||||||||||||||||
Target  VVTVYSIFGRGPSGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISFVYIVTAIVGVEAWYEPFLFNFLYRD
        ggagttatgcgctggagtgctccctggttttactctgataagactcctgtgaacg                aattgtagagagggggttgctctatttag
        ttctacttgggccgtgttttatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaga
        tgtgtcctaaaattcttttttcgagatgttccgccgaatcagttcgggatctcag                tattccagtgtgatgcgtatcgttcatac
                                                                                                            

Query   LFTAMIIG <---Intron---> CALCVTX-XSLLNFFR <---Intron---> SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILQSPSDILEIH
        |||||||| <   5263bp   > ||||||   ||||||| <   1375bp   > ||||||||||||||||||||||||||||||||||||||||||/|
Target  LFTAMIIG                CALCVTLPMSLLNFFR                SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILQSPSDILELH
        ctagaaag                tgttgaccaattatta                ataaaatacatgtggagctttcttctattagtacctctgatgtc
        ttccttt                ggctgtctctgttattg                gaaaactaaactaacttcttccgtttttcccgttacccattata
        actagtt                ttgatgttagtaactc                actatccgactactatgtctttatgactgtaagctggtattaggt
                                                                                                            

Query   PRLFYFMVGTAFANIT <---Intron---> CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTAVFTLAHIHYGVRV <---In
        ||/||||||||||||| <   1289bp   > |||||||||||||||||| |||||||/||||||| /|||||||/|||||||||||||||/| <   22
Target  PRVFYFMVGTAFANIT                CQLIVCQMSSTRCPTLNWFLVPLFLVILVVNLGVPAYVESILLHTLTAVFTLAHIHYGVQV       
        cagtttaggagtgaaa                tccagtcaaaactcatattcgccttgacggatggcgtggaacccataggtacgcactggcg       
        cgttatttgcctcatc                gatttgatggcggcctagtttcttttttttatgtccatagtttactccttctcataagtat       
        taacctgtaactccca                tggtttagcccgcatgtgcctttcgtcggacaaattctgctcgttaattctggccttaaag       
                                                                                                            

Query   tron---> VKQLSNHFQIYPFSLRKPNSDULGTEEKSIGL
        66bp   > |||||/|||||||||||||||||| |||/ ||
Target           VKQLSSHFQIYPFSLRKPNSDULGMEEKNSGL
                 gaccaactcatctttaacatgtcgaggaaagc
                 taatggatatactctgacacagtgtaaaaggt
                 agggccttgttccgggaacgtaaagaagttcg
                                      *          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1699 ; UGA-SECIS: 1729

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = KZ836237.1:subseq_21593854,100272_ Strand = + Positions = 63910 - 63989
 Found by:  Infernal (score=24.01) Covels (score=15.24) SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 21   Insertion in stem2 = 0, 1
 Free Energy = -9.8

         ..(((((((.......(((((((((((((((...................))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ..((({({((......{[[[((((((((((.....................)))).))))))]]]}..--..-))})})))..
 target  GAGGUUUGUGCUUGAAUGAAGAGUGUAUCUUAAACCCUUUUUUGUUUGGAUGGAUUACACUUGGAUAA--AA-UAGGCACCAC
                         ****           ^^^                            ****