_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:3     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 2e-55
 Query name: gi|823424337|ref|XP_004409338.2| PREDICTED: selenoprotein H [Odobenus rosmarus divergens]
 Query range: 1-122  (total 122)

 Target: /data/www-rg/seblastian_results/684115292/tempfiles/temptarget.fasta
 Chromosome: KZ836402.1:subseq_32907821,100293_ Strand: +
 Positions:
 -Exon 1  49928        50293

 Redox box: YES

Query   MASRGRKRKAEVAVVAAAAKQEKPAGGRKAVEAATVVIEHCTSURVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLLRPDGSSVELWTGIKKG
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Target  MASRGRKRKAEVAVVAAAAKQEKPAGGRKAVEAATVVIEHCTSURVYGRNAAALSQALRLETPELPVEVNPAKPRRGSFEVTLQRPDGSSVELWTGIKKG
        agtcgaacaggggggggggacgacgggcagggggaggagctaatcgtgcagggcacgtccgacgccgggacgaccagatggaccccggaaggctagaaag
        tccgggagacatcttccccaaaaccgggactaccctttaagcgggtaggaccctgactgtaccatctataccacggggtatctagcagggtatgcgtaag
        gttcgagggcggggcggggagggggccggaggcgccacgtcgcacccgcccgcgcgggcggcggaggggttcgcggcccgggggcaccctggcgtgtggg
                                                   *                                                        

Query   PPRKLKFPEPQEVVKELKKHLS
        ||||||||||||||||||||||
Target  PPRKLKFPEPQEVVKELKKHLS
        cccacatcgccgggagcaacct
        ccgatatcacaattaataaatc
        cacacgctgtaggggggggctc
                              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 51 ; UGA-SECIS: 285

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = KZ836402.1:subseq_32907821,100293_ Strand = + Positions = 50345 - 50412
 Found by:  Infernal (score=27.12) Covels (score=24.97) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -11.62

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(((({(---....([[{(({(((((((......--------...)))))))}))}]])......-...)}))))...
 target  GUUGGAGCA---UUUAUGAUGGAACAUGGCCAAACU--------UCAGUCAUGUACCUGAAGCCAUG-GUUUCUUCCCCU
                         ****           ^^^                       ****