_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-36
 Query name: gi|902887759|ref|XP_013033439.1| PREDICTED: 15 kDa selenoprotein [Anser cygnoides domesticus]
 Query range: 7-141  (total 143)

 Target: /data/www-rg/seblastian_results/535733588/tempfiles/temptarget.fasta
 Chromosome: KZ836410.1:subseq_70483,100311_ Strand: +
 Positions:
 -Exon 1  50084        50298
 -Exon 2  50519        50708

 Redox box: no

Query   VNVYGAQLSSEACRELGFSSNLLCSSCNLLGQFNLNQLDPFCRQCCHEEAQLETRKLYAGAVLEVCGUKLGR <---Intron---> FPQVQAFVRSDK
        |/ /||/ |||||||/|||||||||||/||||||| |||| || || |||| ||/||||||/|||||||||| <   220bp    > ||||||||||||
Target  VSAFGAEFSSEACREIGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGUKLGR                FPQVQAFVRSDK
        gtgtgggtttggtagagttaatctattgccgctaccccgcgtagttcgggctgaaactgggacggtgtacga                tccgcgtgaaga
        tcctgcatccacggatgtcgattggcgattgatattatacagggggaaacatacaatacgcttatgggatgg                tcatacttggaa
        gtatgagtaagtcagacccccgccctttttagtcgtgcttctaactgaaaataaagttattttattaaagg                gctacattcgtta
                                                                           *                                

Query   PKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLE
        |||||||||||| ||||||||||||||||||||||||||||||||||||||
Target  PKLFRGLQIKYVHGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLE
        cactagccaatgcgtgcgtactggagaagggtaacataagagggtcagatg
        cattggtataatagcacttattaaagatcaatgttagacagtaattgaata
        caacaaaacgttttattaagtgtccgcttaaacccagcactaaacgtagga
                                                           
 Sequence until next stop: 
TGCATATAA
 C  I  * 

 Distance CDS-SECIS: 569 ; UGA-SECIS: 770

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = KZ836410.1:subseq_70483,100311_ Strand = + Positions = 51278 - 51355
 Found by:  Infernal (score=33.26) Covels (score=27.26) SECISearch1.0 (pattern=default)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -20.76

         ..(((((((.......(((((((((((((((...............))))))))).)))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         (((((((((((.....{[[((((((((((((...............))))))))).)))]]}.....-)-))))))))))
 target  CAGAGAUUUGCAUUAAUGAAGACUACACAGAAAACCUUCAGGAGGAUUUGUGUGGUUCUGAUAUUUA-G-CAAAUUUUUG
                         ****           ^^^                        ****