_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:4     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 0.0
 Query name: gi|823400991|ref|XP_004417816.2| PREDICTED: selenide, water dikinase 2 isoform X1 [Odobenus rosmarus divergens]
 Query range: 1-447  (total 447)

 Target: /data/www-rg/seblastian_results/454033165/tempfiles/temptarget.fasta
 Chromosome: KZ836391.1:subseq_817161,101199_ Strand: +
 Positions:
 -Exon 1  49910        51250

 Redox box: no

Query   MAEAAVTVAGGEVVAAAEGSGSAGLSLGRGFSSYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPPLGLGLVGGHEEAAQEGG
        |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MAEAAVTVAGGEVVAAAEGSGSAGFSLGRGFSSYRPFEPQALGLSPSWRLTGFSGMKGUGCKVPQETLLKLLAGLTRPDVRPPLGLGLVGGHEEAAQEGG
        agggggaggggggggggggtgtggttcgcgttatcctgccgcgcacatccagttgaagtgtagccgaccaccggcaccggccccgcgcgggcggggcggg
        tcacctctcggattcccagcgccgtctgggtcgagctacactgtgcgggtcgtcgtaggggatcaacttattcgtcgcatgcctgtgttggaaaccaagg
        ggacgggcccaggggggacgccgcctgcgccgccgccgcgggcccgcgggcccccggcaccgccggggcacggaggaacggcggcgcgcactaggcgacc
                                                                  *                                         

Query   LPAGAEPNPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMTEEEREKITPLMIKGFRD
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  LPAGAEPNPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMTEEEREKITPLMIKGFRD
        ccggggcacatcgcgagagttgaccacggctcgcaagtttctgggctaagcagtgagcagctgagaagtgaatatcagacaaagggcgaaaccaaagtcg
        tccgcacacctcctgtgtacgttctgaggtcttaccattacttaacattggtcgcattgatactgtcagaatttttgtgagtcaaagaatcctttagtga
        agcgcacccctacgctggccccacggcgtgagggtgcctccggatccgggcagtccggtccccgcttatccgggaccccgtgtgggaagaaacgcgcttt
                                                                                                            

Query   AAEEGGTAVTGGQTVVNPWIIVGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKINMVVSREEVELAYQEAMFNMATLNRT
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  AAEEGGTAVTGGQTVVNPWIIVGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKINMVVSREEVELAYQEAMFNMATLNRT
        ggggggaggaggcaggactaagggggaggtccagtaacgaggggggcgtaactgacgggagcctcgacgataaaaaggtaggggcgtcggataagacaaa
        ccaaggcctcggacttacgtttggtccttgacaatttcagcttgattttcactgcatctacaagtaacaggaatatttcgaatatcaaacttatcctagc
        ttgaagtagttaaggactgtcctgtctgatgataccgcctattgtgcgacacaacattctccaggttggagtaatggtcaaaaggttgacgccgtcacat
                                                                                                            

Query   AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQA
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQA
        gggtacatagcggagaagtgacgctcacgaccaaggttgacaccaagaaggaaagagctgcccgatggatggtcatccagcggctttgaattatgggccg
        ccgttactacacccatcgtgttgacaatcaaagaatctttaatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgcataccaagagaac
        ttaagcgttacacgtcactccaactgctaaaaacggctctttgattcggtcccgctgctgctaacaaattgaagttgaaagatctttacatcgtagtcaa
                                                                                                            

Query   WIVGIVEKGNRTARIIDKPRVIEVLPRGATATALAPDNSSASSEPSS
        |||||||||||||||||||||||||||||||||||||||||||||||
Target  WIVGIVEKGNRTARIIDKPRVIEVLPRGATATALAPDNSSASSEPSS
        taggaggagacagcaagaccgaggcccggagagcgcgatagttgcat
        gttgttaagagccgttaacgttattcggccccctccaacgcccacgc
        gccttgagacgacgctcgtattgcattgcttcttttctctcctgttg
                                                       
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 574 ; UGA-SECIS: 1738

------- SECIS element -- id:4 -- grade:A ----
 Chromosome = KZ836391.1:subseq_817161,101199_ Strand = + Positions = 51825 - 51901
 Found by:  Infernal (score=29.16) Covels (score=21.47) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -17.11

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (((({(((((--....([[{(((((((.((...................)))))))))}]])......-.-)))))}))))
 target  UUGGUCUCUG--UUAAUGACGUCUCUCUCUCUAAACCCCUUUAAGGACUGGGAGAGGCAGAACAAGCC-C-CAGAGCCCAA
                         ****            ^^^                       ****