_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:3     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-60
 Query name: gi|946682873|ref|XP_006193513.2| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial, partial [Camelus ferus]
 Query range: 22-219  (total 219)

 Target: /data/www-rg/seblastian_results/262514106/tempfiles/temptarget.fasta
 Chromosome: KZ836507.1:subseq_4427724,100413_ Strand: -
 Positions:
 -Exon 1  50480        50661
 -Exon 2  50252        50396
 -Exon 3  49998        50149
 -Exon 4  49843        49867
 -Exon 5  49548        49607
 -Exon 6  49440        49469

 Redox box: no

Query   RAERVGQGDADQGLAPRGPQSAQHALPLQCASRDDWRCAHSMHEFSAKDIDGHMVNLDKYR <---Intron---> GYVCIVTNVASQUGKTDVNYTQL
        || ||||     ||          || |||||||||||| |||||||||||| |||||||| <    83bp    > |/|||||||||||||||||||||
Target  RAGRVGQVAVGSGLGAPKSPRRSCALALQCASRDDWRCAQSMHEFSAKDIDGRMVNLDKYR                GFVCIVTNVASQUGKTDVNYTQL
        cggcggcggggtgcggcatcccttgcgtctgtcggtctgctacgttgagaggcagacgatc                gtgtagaaggtctgaaggatacc
        gcggtgatctgcgtgccaccggcgctctagccgaagggcactaatccaataggttataaag                gttgttcatccaggacataacat
        gcgagcggagccgcccggcaccacctcggcgcaccgcttgtgcgcccgcctacgtcgcgc                gccgcccccgcggacaacacttgt
                                                                                                 *          

Query   VDLHARYAECGLRILAFPCNQFGRQ <---Intron---> EPGSNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGKGILGN <---Int
        ||||||||| ||||||||||||||| <   102bp    > ||||||||||||||||||||//|||||||||||||||||||||||/||||| <   130
Target  VDLHARYAEGGLRILAFPCNQFGRQ                EPGSNAEIKEFAAGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGILGN        
        ggccgctggggtcacgtctactgac                gcgaaggaagtgggtagatgataaatgaggggccctataagccagagacga        
        tatacgacaggtgttctcgaatgga                acggacataatccgaatatatagatgtagaacactgagtatacagggttga        
        ccgccactgctagcgcctccgcggg                gagtcggcagcttctccactgccgctgcgcctcggggggacgcgggccga         
                                                                                                            

Query   ron---> AIKWNFTK <---Intron---> FLIDKNGCVVKRYGPMEEPL <---Intron---> VIEKDLPCYL
        bp    > |||||||| <   235bp    > |||||||||||||||||||| <    78bp    > ||||||||||
Target          AIKWNFTK                FLIDKNGCVVKRYGPMEEPL                VIEKDLPCYL
                gaatataa                tcagaagtggactgcaggcc                gagagtcttc
                ctagatca                tttaaaggttagagctaact                ttaaatcgat
               tccagtccg                cctcgcctggggttcgagcg                aaggcgcccc
                                                                                      
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 53 ; UGA-SECIS: 425

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = KZ836507.1:subseq_4427724,100413_ Strand = - Positions = 49386 - 49314
 Found by:  Infernal (score=32.26) Covels (score=38.11) SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -13.56

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({({(({(.--....([[{((((((((({(...............)})))))))))}]])..--..-.)}))})}).
 target  CUACCCGGCA--CCUAUGACGGUCUGCCUGAAAACCAGCCCGCUGGUGGGGCAGACCCGAGAA--CU-CGGCGUGCAC
                         ****           ^^^                       ****