_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-41
 Query name: gi|961726607|ref|XP_014923639.1| PREDICTED: glutathione peroxidase 2 [Acinonyx jubatus]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/801209813/tempfiles/temptarget.fasta
 Chromosome: KZ836243.1:subseq_34797809,102891_ Strand: +
 Positions:
 -Exon 1  50000        50221
 -Exon 2  52544        52891

 Redox box: no

Query   MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||||||||||||||||||||||||||||||||||/|||||||||||||||||||||||||||||| <   2322bp   > ||||||||||
Target  MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTSRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggaca
        tcatcactaatgctgtagaatatactgggctttaatcctggccggatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gtcacgccccctcccgcgggatccgcacgcggtgcgcgcacgccgcccgccggacctcgcggttcctccatatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPDDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        acatgccgggtccatacgcatggagcagccgtgtcagacctcgggcttcaagcataatacgcctgggtatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggtacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctcctatacatag
        tcgtcctgaacgcctctcagtggttgcgttccccggcgccctttcatccgctcgcctgcggccatgcgctggcttgcgggccccccccctccctgtccac
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 203 ; UGA-SECIS: 653

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ836243.1:subseq_34797809,102891_ Strand = + Positions = 53095 - 53158
 Found by:  Infernal (score=33.78) Covels (score=24.98) SECISearch1.0 (pattern=default)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -25.1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---(...([[{(((((({(((......--.-----...)))}))))))}]])----...))))))))..
 target  GGCCUUCAC---AGAAUGAUGGCACCUUCCUAAACC--G-----UAUGGGCGGUGUCUGAG----AAGUGUGAAGGGC
                         ****           ^^^                       ****