_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-117
 Query name: gi|823404793|ref|XP_004417792.2| PREDICTED: glutathione peroxidase 1 [Odobenus rosmarus divergens]
 Query range: 1-208  (total 208)

 Target: /data/www-rg/seblastian_results/270593818/tempfiles/temptarget.fasta
 Chromosome: KZ836298.1:subseq_40013307,100569_ Strand: +
 Positions:
 -Exon 1  49946        50569

 Redox box: no

Query   MCAAPLAAAAAAAGAAAPRSVYAFSARPLAGGEPLSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNS
        ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Target  MCAAPLATAAAALGAAAPRSVYAFSARPLAGGEPLSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLPFPCNQLGHQENAKNAEILNS
        atggccgaggggcggggcctgtgttgcccggggccacgtccgagccagaggtctgaagcgtacaagcccccgccgcggcctctaccgccgagaaggacat
        tgccctcccccctgccccgctactccgctcggactgtgctggattttaatcctggcctgaacataataggtgcggttttctcgaatgaaaacaacattac
        gtctgccccccctgggcgccgtcctgcggccggcgcgtcggcgggccgtgggcacagcgcccggcggggccgcgcgtgcccgccgcgtggctgcagcgtc
                                                             *                                              

Query   LKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLRESLPAPSDDATALMTDPKFIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDIEAL
        ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  LKYVRPGDGFEPNFTLFEKCEVNGAQAHSLFAFLRESLPAPSDDATALMTDPKFIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDIEAL
        catgccgggtgcatactgatggaggcgcactgtccgtccgcagggagcaagcataattcgtcagagtatgatcggcgggcgcatacctcaagagcgaggc
        taatgcgagtacatcttaagatagcacagttcttgactcccgaacccttcacatttgcctggaatcgataatttgcagtctggagggtcctatacatact
        cgccatccgcgccccttggtagtcaggccccccgggcgtcctctcttcgcccgcccgtcgccccccgctggcggcattgtgcgcccctacctcgtccacg
                                                                                                            

Query   LSQGPSSA
        ||||||||
Target  LSQGPSSA
        ctcgcaag
        tcagcggc
        gcggcctc
                
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 39 ; UGA-SECIS: 501

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KZ836298.1:subseq_40013307,100569_ Strand = + Positions = 50609 - 50683
 Found by:  Infernal (score=31.16) Covels (score=22.99) SECISearch1.0 (pattern=default)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 1, 0
 Free Energy = -19.54

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(((((((......{[[{((((((.((((.........-----...))))))))))}]]}......-..)))))))...
 target  CUCGGGAUUUCAUCGAUGACGGUGUUUCCUCGAAAUCUGC-----AUGGAGGAACACCUGAUUUCCAG-AAAAAUCCCCUG
                         ****            ^^^                       ****