------- SECIS element -- id:1 -- grade:B ----
 Chromosome = ULFQ01000003.1:subseq_7706671,100644_ Strand = - Positions = 3859 - 3779
 Found by:  Infernal (score=13.55)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -8.13

         ..(((((((........((((((((((.(((((.................))))).))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .({({(((((.......([[((((((({(((((.................)))))})))))))]])..--...)))))})}).
 target  CUUAAACUUGCCAAGUUUGAAGUUUCCUGAGUUAACAUGACUGGAGGAGGAAUUCUGGGAGUUGAAGU--CCACAAGUCUUAA
                          ****            ^^                           ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = ULFQ01000003.1:subseq_7706671,100644_ Strand = + Positions = 97648 - 97725
 Found by:  Infernal (score=11.72) Covels (score=4.51)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -11.51

         ..(((((((.......(((((((((((((((....................))))))).).)))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggcca-g-gcCuGAUGuu--u-uuucaugaccggc
         .({(((((((--....{[[(((([{(((((------................)))))}.-]))))]]}.......-..)))))))}).
 target  CAGUCAAAGA--UAAAUGAAGAGAAACCUG------GUUUAACUGCAAGGAACAGGUCA-GCUUUGAUGAGGUAA-CUUCUUUGAGUA
                         ****                                            ****                    

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = ULFQ01000003.1:subseq_7706671,100644_ Strand = + Positions = 72765 - 72834
 Found by:  Infernal (score=11.06) Covels (score=10.55)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -14.52

         ..(((((((.......(((((((((((((((...................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({(((((---((..([[(((((({((((------(.............)))))}))))))]])..--.)-))))))})..
 target  UUUCUUUUA---GUCAUGAGGAUCACUUCA------GGUCAGAACGUUCACUGAAAUGGUUUGAAAC--AA-CUGAAGAGCA
                         ****                                         ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = ULFQ01000003.1:subseq_7706671,100644_ Strand = - Positions = 6583 - 6502
 Found by:  Infernal (score=10.45) Covels (score=1.49)
 Stem2 length = 12   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -12.83

         ..(((((((.......((((((((((.(((((...............))))).))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu--u-uuucaugaccggc
         ..(({((((.......{[[{((({(([((((((((.........))))))))]))})))}]]}.......-...))))}))..
 target  AGUUUGCAUACUUUGAUGAAAUCACCAAGUUUUCACCAAUUUCCUGAAGGCUGGGAGGUAGACGUUUAUU-UCAAUGUCAGGU
                         ****               ^^                      ****