------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFQ01000418.1:subseq_192977,101000_ Strand = - Positions = 49165 - 49077 Found by: Infernal (score=27.07) Covels (score=33.01) Stem2 length = 11 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -13.98 ..(((((((................(((((((((((((((.................))))))))))))))).........))))))).. model uucggucaugcg---------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc .(((((({(................([[{(((((((((((.................)))))))))))}]]).....-...)})))))). target UUGUUCAUCUUGGCAAAUCGCUCAAUGACGGGAGCUGCUGAAAUGUUGCCCGACACCUGGCAGUUCCCUGAAAACUC-UCCGCUGGAUGC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = ULFQ01000418.1:subseq_192977,101000_ Strand = + Positions = 30758 - 30835 Found by: Infernal (score=11.78) Covels (score=7.63) Stem2 length = 9 Apical loop length = 25 Insertion in stem2 = 0, 0 Free Energy = -8.01 ..(((((((.......(((((((((((((((.......................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..({(({((---(...{[[((({(((((((.........................)))))))})))]]}----..-)))}))}).. target CAACGGCAG---GCUGUGAAGUUUUUCUUUAAAAUAUAUAUAUAUAUAUCGGUGCAAGGAAAUAUUGAC----CC-CCUCCCCUCC **** ^^^ ****