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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 2e-17
 Query name: gi|1002600198|ref|XP_015679173.1| PREDICTED: selenoprotein T [Protobothrops mucrosquamatus]
 Query range: 1-195  (total 195)

 Target: /data/www-rg/seblastian_results/97309263/tempfiles/temptarget.fasta
 Chromosome: ULFQ01000001.1:subseq_34944169,103244_ Strand: +
 Positions:
 -Exon 1  45233        45369
 -Exon 2  50011        50121
 -Exon 3  50518        50644
 -Exon 4  52098        52185
 -Exon 5  53123        53244

 Redox box: YES

Query   MKPILALLLLLAVGLSGAGAQPGGLPPGKKLRMAYATGPLLKFQIC <---Intron---> VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR 
        ||| ||||||/||||||||||||||||||||||||||||||||||| <   4641bp   > ||||||||||||||||||||||||||||||||||||| 
Target  MKPTLALLLLVAVGLSGAGAQPGGLPPGKKLRMAYATGPLLKFQIC                VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR 
        aacacgcctcggggtaggggccggcccgaaccagtgagctcatcat                gttgtacgtggtacgaacctcgacagggatccccata 
        tacctctttttctgtggcgcacggtccgaatgtcaccgcttatatg                tcggaggttaaatgttgagacatgtagaaatcactag 
        gggcgggggggggcgcctgtgactgttggaacgccccgggcgcgc                ttcaacgggtagcggttcggcaccctagacctcatat  
                                                                        *                                   

Query   <---Intron---> HIASFLSVFKLVLIGFIIVGKDPFALFGMQTPSIWQWGQENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEIT
        <   396bp    > |||||||||||||||||||||||||||||||| ||||||||| <   1453bp   > |||||||||||||||||||||||||||
Target                 HIASFLSVFKLVLIGFIIVGKDPFALFGMQTPGIWQWGQENK                VYACMMVFFLSNMIENQCMSTGAFEIT
                       cagttttgtacgcagtaaggagctgttgacacgatctgcgaa                gtgtaagttcaaaagactataggtgaa
                       atccttcttattttgttttgaactcttgtaccgtgaggaaaa                tacgttttttgattaaagtccgctatc
                      ataatcgaccaagaacctttcgttttatcgatatcgggaaatg                atttggtccgccgtgcgtgaatataat
                                                                                                            

Query   LND <---Intron---> VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMEQMPHHRS
        ||| <   937bp    > ||||||||||||||||||||||||||||||||||||||||
Target  LND                VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMEQMPHHRS
        tag                gcgttacgtgccctacccgcacgagaacagcagcacccat
        ta                atctgcatacgatcctaattattaaatatatataatcaagc
        at                tcaggtggatgtttcggattactttagactgtggagattaa
                                                                   
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 598 ; UGA-SECIS: 1036

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = ULFQ01000001.1:subseq_34944169,103244_ Strand = + Positions = 53843 - 53926
 Found by:  Infernal (score=30.8) Covels (score=37.83)
 Stem2 length = 12   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -21.72

         ..(((((((.........(((((((((((((((...............))))))))))))))).............)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc
         (((((((((.........{[[[((((((((((((.............))))))))))))]]]}.........-...)))))))))
 target  CAACAUGAAUGAAAUAAAUGAAGGUCUGUACUGAAGACAGAAAGCUGUUGGUACAGACUGGAUGAUCUACUU-GUCUUCAUGUUG
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