_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-39
 Query name: gi|1002575540|ref|XP_015666870.1| PREDICTED: selenoprotein Pb-like [Protobothrops mucrosquamatus] >gi|1002575542|ref|XP_015666871.1| PREDICTED: selenoprotein Pb-like [Protobothrops mucrosquamatus]
 Query range: 1-265  (total 265)

 Target: /data/www-rg/seblastian_results/308312159/tempfiles/temptarget.fasta
 Chromosome: ULFQ01000014.1:subseq_1952954,101606_ Strand: -
 Positions:
 -Exon 1  51428        51648
 -Exon 2  50676        50888
 -Exon 3  49973        50111
 -Exon 4  49382        49603

 Redox box: YES

Query   MGYLPPTTKALLLGLVIATTIAEGVVVENQTRICQPAPLWEINGIDPMAGMEGQVTVVVLLKASUHFCLKQAAS <---Intron---> LGSLQEKLSG
        |||||||||||||||||| |/||||||/|||||||||| |/||||/||||||||||||||||||| |||||||| <   539bp    > ||||||||||
Target  MGYLPPTTKALLLGLVIAATVAEGVVVDNQTRICQPAPHWKINGIEPMAGMEGQVTVVVLLKASUQFCLKQAAS                LGSLQEKLSG
        agttccaaagtccgcgaggaggggggggacaaatccgcctaaagagcaggaggcgagggctagatcttcacgga                cgatcgattg
        tgatccccactttgtttccctcagtttaaacgtgacccagatagtactcgtagatctttttacggatgtaaccg                tggtaaatcg
        gccgcgcaacgggaggtttgaaagtgtccacaacagcacggatcaaagtaggcggaggctgaccagcccgaac                ttccgagagtt
                                                                        *                                   

Query   DGMANVSFMIVNEKTPFSRAMYWELKRHAPKGIPVYQQQILEPDVWQILKGNKDDFLIYDR <---Intron---> CKKLTFHIQLPYSFLHLPYVEAA
        ||||||||/||||||| ||||||||||||||||||/||||||||||||| ||||||||||| <   564bp    > |/|||||||||||||||||||||
Target  DGMANVSFIIVNEKTPSSRAMYWELKRHAPKGIPVFQQQILEPDVWQILLGNKDDFLIYDR                CRKLTFHIQLPYSFLHLPYVEAA
        ggagagataagagaacttagattgcaccgcagacgtcccacgcggtcaccgaaggtcatga                taacatcactctatcctctgggg
        agtcatgttttaaaccccgctagatagaccagtcttaaattacatgatttgaaaatttaag                ggatctatatcagttatcatacc
        tcgctctcttgtagctccgagcggcacttcactatcgaacgattcgatagccgtctgatc                gcggctctcggacttgcaattgat
                                                                                                            

Query   VRYTYHKDYCGNCSWYYLNSSQE <---Intron---> VNKTTSTPVMTTEAPRDKVKSLEVLKSQPEKKNQETPNFKHIVQSHSHHGGINTAQPSLHS
        ||||  ||||||||||||||||| <   369bp    > || | |||||||||||||||| | ||||||||||| |||||/ ||||||||||||||||||
Target  VRYTSRKDYCGNCSWYYLNSSQE                VNNTASTPVMTTEAPRDKVKSQEALKSQPEKKNQEAPNFKHLAQSHSHHGGINTAQPSLHS
        gctatcagttgatttttcaaacg                gaaagaacgaaaggcagagaacggtaaccgaaacggcataccgcactccggaaagcctcct
        tgaccgaaaggagcgaataggaa                taaccgccttccaccgaatagaactagacaaaaaaccataatcagacaaggtaccacctac
        gctgccacttcttcgttgcccgg                gtcaatttggatgtcacaggcgaagacgtagataagtccacacgctcttgatcacaacctt
                                                                                                            

Query   QNHSVNHHTRDSH
        ||||||||||/||
Target  QNHSVNHHTRESH
        cactgaccaagtc
        aaactaaacgaca
        actatcccaaatc
                     
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 635 ; UGA-SECIS: 1235

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = ULFQ01000014.1:subseq_1952954,101606_ Strand = - Positions = 48746 - 48664
 Found by:  Infernal (score=24.16) Covels (score=14.7)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -24.39

         ..(((((((..........(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .(((((((((((.......([[(({[(((((((..................)))))))]}))]])......-))))))))))).
 target  CCUACUUUUCUGCACUCAAUGAAGUAUGCAGUGUAACCUAAAUGUUGCAGUCACUGCAGCCUGAAACUGUU-CAGAAAAGUAGU
                            ****           ^^                         ****