_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-12
 Query name: gi|1004662948|ref|XP_007422408.2| PREDICTED: ethanolaminephosphotransferase 1 [Python bivittatus]
 Query range: 1-407  (total 407)

 Target: /data/www-rg/seblastian_results/571740931/tempfiles/temptarget.fasta
 Chromosome: ULFQ01000039.1:subseq_3733344,103863_ Strand: +
 Positions:
 -Exon 1  19009        19065
 -Exon 2  34094        34162
 -Exon 3  34495        34603
 -Exon 4  42291        42365
 -Exon 5  43232        43494
 -Exon 6  46800        46908
 -Exon 7  49693        49741
 -Exon 8  50002        50182
 -Exon 9  51839        52021
 -Exon 10 53738        53863

 Redox box: no

Query   MAGYEYVSAEQLAGFDKYK <---Intron---> YSAVDNNPLSLYVMHPFWNTVVK <---Intron---> IFPKWLAPNLITFSGFLLLVFNFFLM
        ||||/|||||||||||||| <  15028bp   > ||||||||||||||||||||||| <   332bp    > ||||||||||||||||||||||||||
Target  MAGYDYVSAEQLAGFDKYK                YSAVDNNPLSLYVMHPFWNTVVK                IFPKWLAPNLITFSGFLLLVFNFFLM
        aggtgtgaggccggtgata                tagggaacctctgaccttaagga                atcatcgcataattgttccgtattca
        tcgaaatgcaatcgtaaaa                agctaaactctattactgactta                ttcagtccattctcgttttttatttt
        gcttccgccggcccctgcg                cttgcccttcgtcgtatgctatg                tttgggcatgagtttcgatcccctcg
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PDQKHVPNKVWVIVGLLNFAAYTLD <---Intron---> GVDGKQARRTQSSSPLGELFDHGLDSWACMFF
        ||||||||||| <   7687bp   > |||||||||||//|||||||||||| <   866bp    > |||||||||||||/||||||||||||||||||
Target  AYFDPDFYASA                PDQKHVPNKVWILVGLLNFAAYTLD                GVDGKQARRTQSSTPLGELFDHGLDSWACMFF
        gttgcgttgtg                cgcacgcaagtacggccatggtacg                ggggacgccactaaccggctgcgcgatgtatt
        catacatacc                ccaaaatcaatgtttgttatccact                agtagaacggcacgcctgattaagtaggcgttt
        actctttttt                aacagctacaagcagtccctgttta                tggtaaaatccacccatgactctcgccgtcgct
                                                                                                            

Query   VVTVYSTFGRGSNGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISVVYIVTSIIGVEAWYNPFMFHFLYKD
        ||||||||||||||||||/|||||||||||||||||||||||||||||||||||| <   3305bp   > |||||||||/|||||||||||/|||||||
Target  VVTVYSTFGRGSNGVSVFILYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISVVYIVTAIIGVEAWYNPFLFHFLYKD
        ggagttatgcgtaggagtactccctggttttactctgataagacttctgtgaacg                aatggtagagaaggggttactctctttag
        ttctacctgggcagtgttttatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaaa
        ggcgctatcaacttccttcccgttggtgcacctctgggttagtccatgcctccgg                ctaaaccgaccaaggcgcctcgtttatac
                                                                                                            

Query   LFVTMIIG <---Intron---> CALTVTIPMSLNNYYK <---Intron---> AYANGTLKHHSFYEAVLPFFSPLLLFILCTVWIFQSPSDILETH
        |||||||| <   2784bp   > || ||||||||/|||| <   260bp    > ||| |||||||||||/||||||/|||||||/||||||/|||| |
Target  LFVTMIIG                CAFTVTIPMSLSNYYK                AYAKGTLKHHSFYEAMLPFFSPVLLFILCTIWIFQSPTDILEAH
        ctgaaaag                tgtagaacaataatta                gtgagacacctttggacctttcgcctattaatatctcagacggc
        tttcttt                ggctctctctgtgaaaa                cacagctaaactaacttcttccttttttgctgttacccattaca
        gctagtt                ttgttgctcgtgctcc                actcgcccgcccctacggtccgacctctgcctgccgaaatcggct
                                                                                                            

Query   PRLFYFMVGTAFANIS <---Intron---> CRLIVSQMSSTRCQPLNWMLLPLALVILVVISGLVPEQETVLLYLVTIFITLAHIHYGVNV <---In
        ||/||||||||||||| <   1656bp   > |/||||||||||||||||/|||||||||/|/| //|/||| ||||/||||||||||||||| <   17
Target  PRIFYFMVGTAFANIS                CQLIVSQMSSTRCQPLNWLLLPLALVILIVMSDVLPKQETNLLYLITIFITLAHIHYGVNV       
        ccatttaggagtgaat                tctagacaaaactcctatcccccgcgacagatggccacgaaccttaaataatgcactggag       
        cgttatttgcctcatc                gatttgatggcggactagtttctctttttttcattcaaacattattctttctcataagtat       
        accctcgtgaccatct                tagtctggcctatgggcggttatgttctaggacgaaagagtcctacctccggactttactg       
                                                                                                            

Query   tron---> VRQLSKHFNIRTFSLQKPSSDULDMEKASVEENFSLRSSEAL
        16bp   > ||||||||||/|||||||||||| ||| | ||| ||||||||
Target           VRQLSKHFNIQTFSLQKPSSDULGMEKVSSEENVSLRSSEAL
                 gaccaactaacatttcacatgtcgagagttggagaccttggc
                 tgatgaatatactctaacgcagtgtaatccaaatgtgccact
                 gggttaccccacttaagccttaacgagaaagacccggtagag
                                      *                    
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 938 ; UGA-SECIS: 998

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = ULFQ01000039.1:subseq_3733344,103863_ Strand = + Positions = 54802 - 54883
 Found by:  Infernal (score=29.65) Covels (score=16.37)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -17.27

         ..(((((((.......(((((((((((((((...................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..([(((((.......([[[({(((((((((...................)))))))))})]]]).....-...)))))])..
 target  UGUAUGUGUGCUUAAAUGAAGAGUGCAGCCUAAACCCAUUUUUCUUAGAAAGGUUGCACCCGGAAAAAAG-UGAGCACAGAAU
                         ****           ^^^                           ****