_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 2e-19 Query name: gi|1004664361|ref|XP_007423136.2| PREDICTED: selenoprotein H [Python bivittatus] Query range: 1-131 (total 132) Target: /data/www-rg/seblastian_results/569997306/tempfiles/temptarget.fasta Chromosome: ULFQ01000205.1:subseq_407633,104463_ Strand: - Positions: -Exon 1 55617 55765 -Exon 2 54316 54461 -Exon 3 49991 50085 Redox box: YES Query MPPKGRKRKPDIPQAEAAASNGEGANDVEKLPKLRKKHEGLGDLRVIIEHC <---Intron---> KSURVFGRRAEAVSQELCLAFPDILVEINLEKP ||||||||| |||||| |||||| /||/||||//| /| ||| | |||| < 1155bp > |||||||| |||/||||||| ||| ||/||||| Target MPPKGRKRKAKIPQAEATASNGEGTSDVKKLPKIQKT-KGSGDLHVTIEHC KSURVFGRTAEAISQELCLALPDICVEVNLEKP accagcaaagaaccgggagtagggaaggaatcaacaa-agtggccgaagct aatcgtgcagggaacgctcgccgatgggacgac tccaggagacatcacaccccagagcgataatcataac-agcgatatctaag agggttggccactgaatgtctcatgtatataac gtcggaaggagttaaacaactagacttgaagcgcggt-aagacttgctgc tacaactacatgtccaggcgcttcctggcctaac * Query RRNSFEVVLLKKDGTK <---Intron---> AELWSGLKKGPPRKLKFPEPSNIVEMVKRNL |||||||||||||||| < 4230bp > ||||||||||||||||||||||||||| || Target RRNSFEVVLLKKDGTK IELWSGLKKGPPRKLKFPEPSNIVEMVKLNL caaatgggctaaggaa agctagcaagcccatatcgcaaaggagacat ggagtattttaaagc atatgggtaagccgatatcacgattattatat gatctagtcgagtcc aagagtttaagaccagacaacccctagggcca Sequence until next stop: CTAAAGTCAACAATGATGGAGTAG L K S T M M E * Distance CDS-SECIS: 581 ; UGA-SECIS: 812 ------- SECIS element -- id:1 -- grade:B ---- Chromosome = ULFQ01000205.1:subseq_407633,104463_ Strand = - Positions = 49409 - 49325 Found by: Infernal (score=22.61) Covels (score=14.05) Stem2 length = 10 Apical loop length = 22 Insertion in stem2 = 0, 0 Free Energy = -12.31 ..(((((((.........(((((((((((((((....................))))))))))))))).........))))))).. model uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc .({({(({((........([[{((((((((((......................))))))))))}]]).....-..))}))})}). target UGUGAGCUGGAGCAUUCAUGAUGAGAUAUGAUGAAGUGGGGUGAAGAAACUCUGGUCGUAUCUCUGAAACUGC-UGCCCGCCCCUC **** ^^ ****