_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-14
 Query name: gi|1002586004|ref|XP_015671689.1| PREDICTED: selenoprotein K isoform X1 [Protobothrops mucrosquamatus]
 Query range: 1-93  (total 93)

 Target: /data/www-rg/seblastian_results/559649686/tempfiles/temptarget.fasta
 Chromosome: ULFQ01000003.1:subseq_3625270,100092_ Strand: -
 Positions:
 -Exon 1  50570        50588
 -Exon 2  50001        50091
 -Exon 3  48627        48704
 -Exon 4  47551        47641

 Redox box: no

Query   MVYISNG <---Intron---> QVLDNRSRAPWSLSSITDFFWGIADFIVMF <---Intron---> FQSIIHPDLRRGYTSSSSSRYDDGRG <---
        ||||||| <   478bp    > |||||||||||||||||||||||||||||| <   1296bp   > ||||||||||||| |||||||||||| <   
Target  MVYISNG                QVLDNRSRAPWSLSSITDFFWGIADFIVMF                FQSIIHPDLRRGYASSSSSRYDDGRG     
        agtatag                cgtgacacgctatttaagtttgaggtagat                tcaaaccgtaagtgtttttatgggag     
        ttatca                gattaagggccggtcctcattggtcattttt                tagttacatgggaccccccgaaaggg     
        gtctgt                aatgtcgtgtagtgatatcccgaaatcagg                ttgcctcatggaccattttaatctaa      
                                                                                                            

Query   Intron---> PPGFPRRRMGRITHFGGPSPPPMAGGGUGR
        985bp    > ||||||||||||||||||||||||||||||
Target             PPGFPRRRMGRITHFGGPSPPPMAGGGUGR
                   ccgtcccaagcaactggcacccaggggtga
                   ccgtcgggtggtcatggcgccctcgggggg
                  ataattttagtaacctatatcaagtttaaag
                                              *  
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1097 ; UGA-SECIS: 1103

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = ULFQ01000003.1:subseq_3625270,100092_ Strand = - Positions = 46453 - 46375
 Found by:  Infernal (score=21.5) Covels (score=28.13)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -12.43

         ..(((((((........(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({{{(((.......([[((((((((((((.................))))))))))))]])..--...)))}}}))).
 target  GUGAAUCAGCAGAAAAAUGAAGUUGUACUGGGAAUUCCAUUUUCUAGGAUCCAGUGUAACUGAAGU--GCAGUUCUAUUAA
                          ****           ^^                          ****