_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-20
 Query name: gi|1002571155|ref|XP_015687102.1| PREDICTED: 15 kDa selenoprotein [Protobothrops mucrosquamatus]
 Query range: 1-169  (total 169)

 Target: /data/www-rg/seblastian_results/770617533/tempfiles/temptarget.fasta
 Chromosome: ULFQ01000060.1:subseq_5764748,120998_ Strand: +
 Positions:
 -Exon 1  48110        48205
 -Exon 2  50000        50167
 -Exon 3  63139        63202
 -Exon 4  69179        69228
 -Exon 5  70870        70998

 Redox box: no

Query   MPVLTVCANMAIRQGAMGLGRYWLWLLASLQA <---Intron---> ISAYGAELSSEACRDLGFSSNLLCSSCDLLGQFGLNQLDPFCRKCCQEEAQS
        || |/||||||||/||/|||||||||| /||| <   1794bp   > ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Target  MPELSVCANMAIREGAVGLGRYWLWLLTALQA                ISAYGAELSSEACRDLGFSSNLLCSSCDLLGQFGLNQLDPFCRKCCQEEVQS
        acgctgtgaagacgggggcgcttcttcagccg                atgtgggtttggtagcgttaatctattgccgctgtactgcttaattcgggct
        tcatctgcatctgagctgtggagtgttcctac                tccagcatccacggatgtcgattggcgattgatgtaatactggaggaaatac
        gtggcctccggtagacggcctcgtggaggggg                atttaaaaaggacattctcctggctttcgtcatcgtggtaccagccaaatat
                                                                                                            

Query   ETRK <---Intron---> LYAGAILEVCGUKLGRFPQVQA <---Intron---> FVKSDKPKLFRGLQIK <---Intron---> YVRGSDPVLK
        |||| <  12971bp   > |||||||||||||||||||||| <   5976bp   > |||||||||||||||| <   1641bp   > ||||||||||
Target  ETRK                LYAGAILEVCGUKLGRFPQVQA                FVKSDKPKLFRGLQIK                YVRGSDPVLK
        gaaa                ctgggacggtgtatgatccgcg                tgaagacactagccaa                tgcgtgcgca
        acga                tacgcttatgggatggtcata                cttagaacattggtata                atggcactta
        atag                ctaaactagtaaagggctgtg                ttcgccgcagcgaggtg                tgtctttcgg
                                       *                                                                    

Query   LLDDSGNIAEELSILKWNTDSVEEFLNEKLERL
        |||| ||||||||||||||||||||||||||||
Target  LLDDGGNIAEELSILKWNTDSVEEFLNEKLERL
        ctggggaagggcaacataagagggttagacgcc
        ttaaggatcaatgttagacagtaattaaatagt
        cgcctgctcaagccgagcatctaacatagaatc
                                         
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 617 ; UGA-SECIS: 824

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = ULFQ01000060.1:subseq_5764748,120998_ Strand = + Positions = 71616 - 71689
 Found by:  Infernal (score=26.87) Covels (score=26.59)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 1
 Free Energy = -4.74

         ..(((((((.......(((((((((((((((...............)))))))).)))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccag-gcCuGAUGuuuuuucaugaccggc
         (((({((((.--....{[[{((((((((({(.....-.........)})))))).)))}]]}..--....))))}))))
 target  GGGAUUGUAC--UUAAUGAUGACUACAUAGAAAGCC-UUAAUGAGGUGUAUGUAUGUCUGAUGU--CAGUUGUACUUUC
                         ****           ^^                         ****