_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 2e-51 Query name: gi|1002577066|ref|XP_015667711.1| PREDICTED: selenide, water dikinase 2 isoform X2 [Protobothrops mucrosquamatus] Query range: 1-379 (total 379) Target: /data/www-rg/seblastian_results/591092095/tempfiles/temptarget.fasta Chromosome: ULFQ01000082.1:subseq_416315,106297_ Strand: + Positions: -Exon 1 49883 50171 -Exon 2 50809 50912 -Exon 3 51084 51191 -Exon 4 51894 52048 -Exon 5 54153 54243 -Exon 6 54601 54700 -Exon 7 55397 55683 Redox box: no Query MAAVAGSPSATLPSLAATTAPSPAALPPGPPGYRPFEPEAVGLSPGWRLTSYGELRGUGCKVPQETLLRLLEGLGTSHAGLAGAGDTGAAGNPPPTLG < |||||||||||||||| ||||||||||||||||||||||/||/ ||||||||||||||||||||||||||||| ||||| ||||||||||/ ||||| < Target MAAVAGSPSATLPSLATATAPSPAALPPGPPGYRPFEPEALGLNSGWRLTSYGELRGUGCKVPQETLLRLLEGLNTSHAGFAGAGDTGAAGS-PPTLG agggggtctgaccttgagagcacggcccgccgtcctgcggcgcatgtacaatggccgtgtagccgaccaccggcaatcggtgggggagggga-ccacg tcctcgccccctcctccccccgccctccgccgagctacactgtacgggtcgagatgggggatcaacttgttagtaccacgtcgcgacgccgg-ccct ggggcttctccctgggacctatcccggcggttcggtgtgtgtgcgcggccccgggccaccaccggggcacggatctcttgccgcgtggtcgt-tcca * Query ---Intron---> IGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM <---Intron---> GRIACANVLSDLYAMGITECDNMLMLLSISQKMTEE 637bp > |||||||||||||||||||||||||||||||||| < 171bp > ||||||||||||||||||||||||||||/||||||| Target IGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM GRIACANVLSDLYAMGITECDNMLMLLSVSQKMTEE agagttgactacggctcgcaagtttccgggctaa gcagtgagcagctgagaagtgaacaccagacaaagg gtgtacgttctgaggtcttaccattacttaacatt ggtcgcattgatactgtcagaatttttgtgaatcaa ctagcctgttggtgtgcgggtacttcaaaacctgg cctttttggtcctcgcccatccgtgggtgcgagtag Query <---Intron---> EREKIMPLIIKGFRDAAEDGGTSVTGGQTVLNPWIIVGGVATVVCQPNEFIM <---Intron---> PDSAVPGDVLVLTKPL < 702bp > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 2104bp > |||||||||||||||| Target EREKIMPLIIKGFRDAAEDGGTSVTGGQTVLNPWIIVGGVATVVCQPNEFIM PDSAVPGDVLVLTKPL gcgaaaccaaagtagggggggatgaggcagtactaagggggaggtccagtaa cgaggcgggcgcaacc agaattctttagtgaccaaggcctcggacttacgtttggtccttgacaattt cagctcgattttcact agaacgtgacatcgtaagttctaatcggtcgttgcttcgtaatttgctatt gactataatctgtcgtg Query GTQVAVNAHQWLDN <---Intron---> PERWNKIKLVVSKEDVELAYQEAMFSMAMLNRTA <---Intron---> ASLMHTFNAHAATDITGFGI |||||||||||||| < 357bp > |||||||||||||||||||||||||||||||||| < 696bp > |||||||||||||||||||| Target GTQVAVNAHQWLDN PERWNKIKLVVSKEDVELAYQEAMFSMAMLNRTA ASLMHTFNAHAATDITGFGI gacgggagccttga cgctaaaacggtaggggtgtcggataagacaaag gatacatagcggagaagtga gcatctacaagtaa caggaatatttcaaatatcaaacttgtcttagc ccgttactacacccatcgtgt gtagtattcggatt agggtgtgggccaattagccgatgttgcggcaa tctggttctcttcactaatgt Query LGHAQNLAKQQRSEVSFVIHNLPIIAKMAAISKACGNRSRLLQGTSPETSGKLDKPGKEQAKRRPGFCGTPLNDL ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| |||/ Target LGHAQNLAKQQRSEVSFVIHNLPIIAKMAAISKACGNRSRLLQGTSPETSGKLDKPGNEQEKCRPGFCGTSLNDV cgcgcatgacccaggttgacaccaagaaggaaagtgactacccgatcgatgatgacgagcgatacgttgatcagg tgacaatcaaaggatctttaatcttcatcctgacggagcgttagcccaccgataacgaaaaaggcgtggcctaat gccagcgtgagtcgaatctttacctcggtttcaatccgcgccagttagtttggtaactaaaatatactaatatcg Sequence until next stop: TAG * Distance CDS-SECIS: 947 ; UGA-SECIS: 1907 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFQ01000082.1:subseq_416315,106297_ Strand = + Positions = 56631 - 56705 Found by: Infernal (score=23.98) Covels (score=21.38) Stem2 length = 8 Apical loop length = 16 Insertion in stem2 = 1, 0 Free Energy = -10.29 ..(((((((.......((((((((((.(((((...............))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ...((((((---(...([[[(({((((.({(......-..........)})))))}))]]]).....-..)))))))... target UCUCUUCUC---UUUAUGAAGCAUCUCCCUGAAAACC-UUACAAGGUCUUGGAGGAGCGGAGGAAUC-CUAGAGGAGCAG **** ^^^ ****