_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 2e-17 Query name: gi|1002600198|ref|XP_015679173.1| PREDICTED: selenoprotein T [Protobothrops mucrosquamatus] Query range: 1-195 (total 195) Target: /data/www-rg/seblastian_results/889527918/tempfiles/temptarget.fasta Chromosome: ULFQ01000001.1:subseq_34944136,103277_ Strand: + Positions: -Exon 1 45266 45402 -Exon 2 50044 50154 -Exon 3 50551 50677 -Exon 4 52131 52218 -Exon 5 53156 53277 Redox box: YES Query MKPILALLLLLAVGLSGAGAQPGGLPPGKKLRMAYATGPLLKFQIC <---Intron---> VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR ||| ||||||/||||||||||||||||||||||||||||||||||| < 4641bp > ||||||||||||||||||||||||||||||||||||| Target MKPTLALLLLVAVGLSGAGAQPGGLPPGKKLRMAYATGPLLKFQIC VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR aacacgcctcggggtaggggccggcccgaaccagtgagctcatcat gttgtacgtggtacgaacctcgacagggatccccata tacctctttttctgtggcgcacggtccgaatgtcaccgcttatatg tcggaggttaaatgttgagacatgtagaaatcactag gggcgggggggggcgcctgtgactgttggaacgccccgggcgcgc ttcaacgggtagcggttcggcaccctagacctcatat * Query <---Intron---> HIASFLSVFKLVLIGFIIVGKDPFALFGMQTPSIWQWGQENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEIT < 396bp > |||||||||||||||||||||||||||||||| ||||||||| < 1453bp > ||||||||||||||||||||||||||| Target HIASFLSVFKLVLIGFIIVGKDPFALFGMQTPGIWQWGQENK VYACMMVFFLSNMIENQCMSTGAFEIT cagttttgtacgcagtaaggagctgttgacacgatctgcgaa gtgtaagttcaaaagactataggtgaa atccttcttattttgttttgaactcttgtaccgtgaggaaaa tacgttttttgattaaagtccgctatc ataatcgaccaagaacctttcgttttatcgatatcgggaaatg atttggtccgccgtgcgtgaatataat Query LND <---Intron---> VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMEQMPHHRS ||| < 937bp > |||||||||||||||||||||||||||||||||||||||| Target LND VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMEQMPHHRS tag gcgttacgtgccctacccgcacgagaacagcagcacccat ta atctgcatacgatcctaattattaaatatatataatcaagc at tcaggtggatgtttcggattactttagactgtggagattaa Sequence until next stop: TAG * Distance CDS-SECIS: 598 ; UGA-SECIS: 1036 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFQ01000001.1:subseq_34944136,103277_ Strand = + Positions = 53876 - 53959 Found by: Infernal (score=30.8) Covels (score=37.83) Stem2 length = 12 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -21.72 ..(((((((.........(((((((((((((((...............))))))))))))))).............))))))).. model uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc (((((((((.........{[[[((((((((((((.............))))))))))))]]]}.........-...))))))))) target CAACAUGAAUGAAAUAAAUGAAGGUCUGUACUGAAGACAGAAAGCUGUUGGUACAGACUGGAUGAUCUACUU-GUCUUCAUGUUG **** ****