_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-29
 Query name: gi|927181228|ref|XP_013926103.1| PREDICTED: methionine-R-sulfoxide reductase B1 isoform X1 [Thamnophis sirtalis]
 Query range: 1-118  (total 118)

 Target: /data/www-rg/seblastian_results/246599527/tempfiles/temptarget.fasta
 Chromosome: ULFQ01000200.1:subseq_1012026,105798_ Strand: +
 Positions:
 -Exon 1  54576        54788
 -Exon 2  55682        55796
 -Exon 3  57339        57364

 Redox box: no

Query   MCAYLIPPCHIYSSFSPSPSLLTGIYVCSKCGYELFSSQSKFLHSSPWPAFTHPIHSDSISKYLERPGAFK <---Intron---> VSCGKCGNGLGHE
        | |||||| ||||| |||||||||||/|||||||||||||||||||||||||||||||||||||||||||| <   893bp    > |||||||||||||
Target  MRAYLIPPYHIYSSSSPSPSLLTGIYICSKCGYELFSSQSKFLHSSPWPAFTHPIHSDSISKYLERPGAFK                VSCGKCGNGLGHE
        acgttacctcatttttctcttcagatattatgtgtttactatccttctcgtaccacagaatattgccggta                gttgatgagcgcg
        tgcattccaataccccccccttcgtatgcaggaattcgacattacccgcctcactagagtcaatagcgcta                tcggaggagtgaa
        gtctattattatttccatatgcatacttcacctaacccgcacttactgactctttccccccgcaacaatcg                catcgtgtcgcta
                                                                                                            

Query   FLDDGPQKGQSRFUIFSSSLTFVHKA <---Intron---> QSGKNMEK
        |||||||| |||||||||||||| || <   1542bp   > ||||||/|
Target  FLDDGPQKAQSRFUIFSSSLTFVPKA                QSGKNMDK
        tcgggccagctcttataatcatgcag                ctgaaaga
        ttaagcaacacgtgttggctcttca                cacgaataa
        ccctccagcgttcaatcttcattta                tatggcgca
                     *                                    
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1165 ; UGA-SECIS: 1225

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = ULFQ01000200.1:subseq_1012026,105798_ Strand = + Positions = 58530 - 58605
 Found by:  Infernal (score=14.35) Covels (score=14.68)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -12.61

         ..(((((((..........((((((((((((.(((................)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggc-ccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (({((((((..........([[[(((((((-.(((................)))-)))))))]]])----..-.))))))}))
 target  CUGGUAUAGCAUCAUGGUAUGAAUUGCCCC-AUGUAAACCCAUUCUGGAAAGCA-GGGGUGAGGAA----CA-UCUAUAUGAG
                            ****            ^^^                        ****