_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 6e-11 Query name: gi|1004692634|ref|XP_015745922.1| PREDICTED: selenoprotein O [Python bivittatus] Query range: 40-592 (total 592) Target: /data/www-rg/seblastian_results/813854876/tempfiles/temptarget.fasta Chromosome: ULFQ01000027.1:subseq_1795833,112194_ Strand: + Positions: -Exon 1 50246 50409 -Exon 2 55077 55280 -Exon 3 55804 55984 -Exon 4 56601 56731 -Exon 5 57955 58235 -Exon 6 58421 58571 -Exon 7 61492 61677 -Exon 8 61990 62146 -Exon 9 62446 62649 Redox box: YES Query PGAEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVLNPRGERWEIQLKGAGLTPFSR <---Intron---> QADGRKVLRSSIREFLCSEAMFHLGIPTT |||||||||||||||||||||||||||/||||||||||||||||||||||||||| < 4667bp > ||||||||||||||||||||||||||||| Target PGAEPAAHCYCGHQFGSFAGQLGDGAALYLGEVLNPRGERWEIQLKGAGLTPFSR QADGRKVLRSSIREFLCSEAMFHLGIPTT cgggcggctttgcctgatggccgggggctcgggtaccggctgaccagggcactta cgggcagcataaagtctaggatccgacaa cgcacccagaggaatggtcgatgagcctatgattacggaggatatagcgtcctcg acaggattgcgtgattggacttatgtccc gagggccccccccgccctggggcccgcgcgggggcgagggggcgcgccagctcc aaatctatgaccaaactctatgttaaaacc Query RAGTCVTSDSEVIRDIFYDGNPKKEKCTVVLRIAPTFIR <---Intron---> FGSFEIFKPADEYTGRKGPSVDRNDIRIQMLDYVISTFYPEILQT ||||||||||||||||||||||||||||/|||||||||| < 523bp > |||||||| |||/|||||||||||||||||||||||||||/|||| Target RAGTCVTSDSEVIRDIFYDGNPKKEKCTIVLRIAPTFIR FGSFEIFKSADEFTGRKGPSVDRNDIRIQMLDYVISTFYPDILQT aggatgatgtggacgattggacaagataagcaagcataa tgttgatatgggtagcagcaggaagaaacacgtgaaattcgacca gcgcgtccacattgattaagacaaaagctttgtcccttg tgctattaccaatcggagcgtagaatgtattaattgctacattac aagacaagtaattatatttatcgaagtacaaaaaaatt gtaatattatttataatatctttatttatagtttgccactattaaa Query HPDNNIQRNVAFFRE <---Intron---> VSRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFMDR <---Intron---> YDPEHICNG |||| /||| ||||| < 616bp > ||||||||||||||||||||||||||||/||||||||||||||| < 1223bp > ||||||||| Target HPDNIVQRNAAFFRE VSRRTARMVAEWQCVGFCHGVLNTDNMSVLGLTIDYGPFGFMDR YDPEHICNG ccgaagcaaggttcg gtacagaagggtctggttcggcaagaaagcgcaagtgctgtaga tgcgcatag acaattagaccttga tcggccgttcagagtgtgagttacaatgttgtctaagctgttag aacaatgag ctctttgacttctag aaagacggttaggttattttgccattgtgtatatctattatgt atctactcta Query SDNTGRYAYNKQPEICKWNLTKFAEALVPELPLEMSIPILEEEYDAEFEKHYLQIMRRKLGLIQLQLDDDNKLILDLLETMHITG <---Intron---> |||/|||||||||||||||||||||||||||||| |/|||||||||||||||||||||||||||||/|/|/||/|/||||||||| < 185bp > Target SDNSGRYAYNKQPEICKWNLTKFAEALVPELPLETSMPILEEEYDAEFEKHYLQIMRRKLGLIQLQIDEDHKLVLELLETMHITG tgatgctgtaaccgatatacaatgggtgcgcccgaaacacgggtgggtgacttcaaaaacgtacccagggcacgtgctgaacaag caacggacaaaacatgagatcatcacttcatctacgtcttaaaaacataaaatattggatgttatataaaaatttattactatc ttcaaattttgaagttggtacgttatacaataaaccgctgggactcatagttgacgagaatatgtgatattagcgacggtgcca Query ADFTNTFCLLNSFLVDSDPLKLEEFLDQISKQCASLEELKVAYKPQMDPR <---Intron---> QLSMMLMLAQSNPQLFALIGTKSNINKELERIE ||||||| ||||| |/ ||| ||||||||||||||||||||||||||||| < 2920bp > |||||||||||||||||| |||||||||||||| Target ADFTNTFRLLNSFPVEFDPLNLEEFLDQISKQCASLEELKVAYKPQMDPR QLSMMLMLAQSNPQLFALFGTKSNINKELERIE ggtaaatcttattcggtgctacggtcgcatactgtcggtaggtaccagca cctaacatgctaccctgttgaataaaagtgcag gcatcactgttactctatactataattaatcaagcctaatatcaacatacg atctttttcacacattcttgcacataaatagta tattattccggcattgatttacaagtgtgcaaatgaggagatctgtggtc aatcggggaagtcaactcataaattctgagaaaa Query QFSKLQQLTASDLVSRNKRNWKNWLQNYR <---Intron---> VRLEKEMEHISNIDTWNDERLKIMNANNPKYILRNYIAQNAIEAAENGDFLE <- ||||||||||||||/|||/ | |||| || < 312bp > /||||||||||| |||||||||||||/|||||||||||| |||||||||||| < Target QFSKLQQLTASDLVNRNKKTWTNWLQKYR LRLEKEMEHISNTDTWNDERLKIMNASNPKYILRNYIAQRAIEAAENGDFLE cttaccctagtgtgaaaaaataatccata cacgagagcaaaagataggccaaaagaacatataatagcagaggggaggtcg atcataatcccattagaaacgcagtaaag tgtaaataatgacacgaaagtattacgacaattgaatcagctaccaagatta gctgggaaatctactataacgatggggc atgaagagactcttcggttgtgatgtcctaataggccttagttaaaattctag Query --Intron---> VRKVLKLLERPYEDSEGFGEVSEDRDEEEGVTAAAAAVATCSSGTQERIPYSSKPPLWASELCVTUSS 299bp > ||/|||/||||||||||| ||||/|/||| |||/||||||||||||||| |||||||||||||||| Target VRRVLKVLERPYEDSEGFLEVSEEREEEESGMAAASAVATCSSGTQERIPYGSKPPLWASELCVTUSS gacgtagcgactggtggtcggtggaggggagagggtgggatatgacgaactgaaccctgtgctgattt tggttattagcaaacagttatcaagaaaaggtccccctccggcgcaagtcaggacctgccatgtcgcc gaacgacaagatgtaaccggctgggggaatggattttttcccaacgaatatccgtatgctgctgcatg * Sequence until next stop: TAA * Distance CDS-SECIS: 276 ; UGA-SECIS: 282 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFQ01000027.1:subseq_1795833,112194_ Strand = + Positions = 62926 - 63003 Found by: Infernal (score=19.35) Covels (score=25.59) Stem2 length = 12 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -8.76 ..(((((((.......((((((((((.(((((...............))))).))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc ..([({{(((--....([[(((((((((((((...............)))))))))))))]])......-.-)))}})]).. target GAAAUCUGUG--UUUUUGAAGACAAAAAUAUAAAACCAGAUGCUGGAUGUAUUUUUGUCUGAAAACGAA-C-UACCUAGUAC **** ^^^ ****