_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 1e-12 Query name: gi|1004662948|ref|XP_007422408.2| PREDICTED: ethanolaminephosphotransferase 1 [Python bivittatus] Query range: 1-407 (total 407) Target: /data/www-rg/seblastian_results/541712053/tempfiles/temptarget.fasta Chromosome: ULFQ01000039.1:subseq_3717438,119751_ Strand: + Positions: -Exon 1 34915 34971 -Exon 2 50000 50068 -Exon 3 50401 50509 -Exon 4 58197 58271 -Exon 5 59138 59400 -Exon 6 62706 62814 -Exon 7 65599 65647 -Exon 8 65908 66088 -Exon 9 67745 67927 -Exon 10 69644 69769 Redox box: no Query MAGYEYVSAEQLAGFDKYK <---Intron---> YSAVDNNPLSLYVMHPFWNTVVK <---Intron---> IFPKWLAPNLITFSGFLLLVFNFFLM ||||/|||||||||||||| < 15028bp > ||||||||||||||||||||||| < 332bp > |||||||||||||||||||||||||| Target MAGYDYVSAEQLAGFDKYK YSAVDNNPLSLYVMHPFWNTVVK IFPKWLAPNLITFSGFLLLVFNFFLM aggtgtgaggccggtgata tagggaacctctgaccttaagga atcatcgcataattgttccgtattca tcgaaatgcaatcgtaaaa agctaaactctattactgactta ttcagtccattctcgttttttatttt gcttccgccggcccctgcg cttgcccttcgtcgtatgctatg tttgggcatgagtttcgatcccctcg Query AYFDPDFYASA <---Intron---> PDQKHVPNKVWVIVGLLNFAAYTLD <---Intron---> GVDGKQARRTQSSSPLGELFDHGLDSWACMFF ||||||||||| < 7687bp > |||||||||||//|||||||||||| < 866bp > |||||||||||||/|||||||||||||||||| Target AYFDPDFYASA PDQKHVPNKVWILVGLLNFAAYTLD GVDGKQARRTQSSTPLGELFDHGLDSWACMFF gttgcgttgtg cgcacgcaagtacggccatggtacg ggggacgccactaaccggctgcgcgatgtatt catacatacc ccaaaatcaatgtttgttatccact agtagaacggcacgcctgattaagtaggcgttt actctttttt aacagctacaagcagtccctgttta tggtaaaatccacccatgactctcgccgtcgct Query VVTVYSTFGRGSNGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISVVYIVTSIIGVEAWYNPFMFHFLYKD ||||||||||||||||||/|||||||||||||||||||||||||||||||||||| < 3305bp > |||||||||/|||||||||||/||||||| Target VVTVYSTFGRGSNGVSVFILYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV TISVVYIVTAIIGVEAWYNPFLFHFLYKD ggagttatgcgtaggagtactccctggttttactctgataagacttctgtgaacg aatggtagagaaggggttactctctttag ttctacctgggcagtgttttatttgttttctttcagaaaacgttttcggaatgat ctcttattccttgtacgaactttattaaa ggcgctatcaacttccttcccgttggtgcacctctgggttagtccatgcctccgg ctaaaccgaccaaggcgcctcgtttatac Query LFVTMIIG <---Intron---> CALTVTIPMSLNNYYK <---Intron---> AYANGTLKHHSFYEAVLPFFSPLLLFILCTVWIFQSPSDILETH |||||||| < 2784bp > || ||||||||/|||| < 260bp > ||| |||||||||||/||||||/|||||||/||||||/|||| | Target LFVTMIIG CAFTVTIPMSLSNYYK AYAKGTLKHHSFYEAMLPFFSPVLLFILCTIWIFQSPTDILEAH ctgaaaag tgtagaacaataatta gtgagacacctttggacctttcgcctattaatatctcagacggc tttcttt ggctctctctgtgaaaa cacagctaaactaacttcttccttttttgctgttacccattaca gctagtt ttgttgctcgtgctcc actcgcccgcccctacggtccgacctctgcctgccgaaatcggct Query PRLFYFMVGTAFANIS <---Intron---> CRLIVSQMSSTRCQPLNWMLLPLALVILVVISGLVPEQETVLLYLVTIFITLAHIHYGVNV <---In ||/||||||||||||| < 1656bp > |/||||||||||||||||/|||||||||/|/| //|/||| ||||/||||||||||||||| < 17 Target PRIFYFMVGTAFANIS CQLIVSQMSSTRCQPLNWLLLPLALVILIVMSDVLPKQETNLLYLITIFITLAHIHYGVNV ccatttaggagtgaat tctagacaaaactcctatcccccgcgacagatggccacgaaccttaaataatgcactggag cgttatttgcctcatc gatttgatggcggactagtttctctttttttcattcaaacattattctttctcataagtat accctcgtgaccatct tagtctggcctatgggcggttatgttctaggacgaaagagtcctacctccggactttactg Query tron---> VRQLSKHFNIRTFSLQKPSSDULDMEKASVEENFSLRSSEAL 16bp > ||||||||||/|||||||||||| ||| | ||| |||||||| Target VRQLSKHFNIQTFSLQKPSSDULGMEKVSSEENVSLRSSEAL gaccaactaacatttcacatgtcgagagttggagaccttggc tgatgaatatactctaacgcagtgtaatccaaatgtgccact gggttaccccacttaagccttaacgagaaagacccggtagag * Sequence until next stop: TAA * Distance CDS-SECIS: 938 ; UGA-SECIS: 998 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFQ01000039.1:subseq_3717438,119751_ Strand = + Positions = 70708 - 70789 Found by: Infernal (score=29.65) Covels (score=16.37) Stem2 length = 10 Apical loop length = 19 Insertion in stem2 = 0, 0 Free Energy = -17.27 ..(((((((.......(((((((((((((((...................))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ..([(((((.......([[[({(((((((((...................)))))))))})]]]).....-...)))))]).. target UGUAUGUGUGCUUAAAUGAAGAGUGCAGCCUAAACCCAUUUUUCUUAGAAAGGUUGCACCCGGAAAAAAG-UGAGCACAGAAU **** ^^^ ****