------- SECIS element -- id:1 -- grade:B ----
 Chromosome = ULFQ01000005.1:subseq_3132671,103873_ Strand = - Positions = 54176 - 54096
 Found by:  Infernal (score=19.94) Covels (score=14.24)
 Stem2 length = 10   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -7.67

         ..(((((((.......(((((((((((((((....................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .((({((((---....([[[((((((((({(....................)})))))))))]]])......-...))))}))).
 target  CUUUUUUUG---CUGAUGAAAGCUUCUGAUGAAAUUAAAGAGCCUGUUCCAUUUCAGGAGCUGGAGCUUGGG-UUAUAGACAAGA
                         ****           ^^^                            ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = ULFQ01000005.1:subseq_3132671,103873_ Strand = + Positions = 26609 - 26676
 Found by:  Infernal (score=12.44) Covels (score=2.07)
 Stem2 length = 7   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -16.09

         ..(((((((.......(((((((((((.......................))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuu-uuucaugaccggc
         ...((((((---....([[((((((((................-------))))))))]]).....-...))))))...
 target  CAUGGGCUG---CUUAUGAGGUGGCAAUACAAGUUGGCUGUGC-------UUGCUGCUGAACAAAG-GGUCAGCCCUAG
                         ****          ^^                         ****                  

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = ULFQ01000005.1:subseq_3132671,103873_ Strand = - Positions = 22218 - 22138
 Found by:  Infernal (score=11.28) Covels (score=5.71)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -5.85

         ..(((((((.......(((((((((((((((....................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .(((({(((---(...([[{((((({({(((....................)))})})))))}]])......-..))))})))).
 target  UGCAUCAAU---UGCAUGACGUUUACCUUCUCAAUUUCUCUGUCUGAUUGAAGAUGAUGGACAGAGCUAAGG-GAGAUUUAUGUC
                         ****            ^^                            ****