_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 8e-66 Query name: gi|1002601605|ref|XP_015679921.1| PREDICTED: glutathione peroxidase 2 [Protobothrops mucrosquamatus] Query range: 1-191 (total 191) Target: /data/www-rg/seblastian_results/526669648/tempfiles/temptarget.fasta Chromosome: ULFQ01000013.1:subseq_17138694,103735_ Strand: - Positions: -Exon 1 53514 53738 -Exon 2 49997 50344 Redox box: no Query MTTPIAKSFYDLSATDLQGEKVDFNHFRGRVVLIENVASFUATTVRDYTQMNQLQSKYPRRLVVLGFPCNQFGYQ <---Intron---> ENCTNEEIL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| < 3169bp > ||||||||| Target MMTPIAKSFYDLSATDLQGEKVDFNHFRGRVVLIENVASFUATTVRDYTQMNQLQSKYPRRLVVLGFPCNQFGYQ ENCTNEEIL aaacagatttgcagagccggaggtactagaggtagaggtttgaagagtacaacccaatccccggcgtctactgtc gataaggac ttcctcactaatgccatagaatataatgggttttaatcctgccctgaacataatagaacggttttgtcgaatgaa aagcaaatt ggtcacatctcctcttcaggagtcctcggagtgagtgattaccaggtccggtgggcactaggtggtttctgtccg atcatagcc * Query HSLKYVRPGSGFEPNFTLCQKCEVNGNNTHPVFAYLKDKLPYPDDDPSCFMLEPKFILWSPVHRYDISWNFEKFLVGPEGEPFKRYSSKFLTSSIEPDMQ ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||/| Target HSLKYVRPGSGFEPNFTLCQKCEVNGNNTHPVFAYLKDKLPYPDDDPSCFMLEPKFILWSPVHRYDISWNFEKFLVGPEGEPFKRYSSKFLTSSIEPDIQ catatgacgtgtgcatactcatggagaaaccgtgtcagacctcgggctttatgcatactacgcctgattatgatcggcgggctactatatcaaaagcgac agtaatgcgcgtacatctgaagatagaacacttcataaatcacaaaccgtttacatttggctagaatcgataatttgcagactagagcattcggtacata tcgatggcgtctacctttcggtagcccccctctccggtactcatcctcccgggagccggccgtcccccgctggcagatagatcgccccgcctcctgttcg Query RLLKLAK ||||||| Target RLLKLAK cccacga gttatca ccggtca Sequence until next stop: TAA * Distance CDS-SECIS: 199 ; UGA-SECIS: 649 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFQ01000013.1:subseq_17138694,103735_ Strand = - Positions = 49797 - 49733 Found by: Infernal (score=32.7) Covels (score=25.61) Stem2 length = 10 Apical loop length = 11 Insertion in stem2 = 0, 0 Free Energy = -21.4 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .(((({(((---....([[{((((((((((......-..-----...))))))))))}]])----....)))})))). target GACUUCUAC---UGAAUGACAGUCUCCUCUAAAAGC-UU-----CAAGGAGGAGGCUUGAA----AAGUGUAAAAGUA **** ^^^ ****