_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-72
 Query name: gi|406829589|gb|AFS63887.1| GPX1 [Thamnophis elegans]
 Query range: 1-193  (total 193)

 Target: /data/www-rg/seblastian_results/590622798/tempfiles/temptarget.fasta
 Chromosome: ULFQ01000052.1:subseq_4957572,102588_ Strand: +
 Positions:
 -Exon 1  49979        50209
 -Exon 2  52247        52594

 Redox box: no

Query   MAGVSRYTLAGMKALQLGTSEPIDLGSLQGKVLLVANVASLUGTTTRDFTQFRELQERFGSKGLTVLAFPSNQFGHQ <---Intron---> ENATNEE
        |||||||/||| |||/||/|||||||||/|||||//|||||||||/|||||| ||| ||||/|| |||||||||||| <   2037bp   > ||| |||
Target  MAGVSRYSLAGFKALKLGSSEPIDLGSLRGKVLLISNVASLUGTTSRDFTQFHELQRRFGSQGLIVLAFPSNQFGHQ                ENAANEE
        agggtatacggtagcacgttgcagcgtccgagtcataggtctgaaacgtactcgcccctgtcgcagcgtctactgcc                gaggagg
        tcgtcgagtcgtactatgccactatgctggattttcatcctggccggatcataataggtgcagttttctccaatgaa                aaccaaa
        gttcggctgtctggcgggtggcctgcgggaagggtccgcgcacagcgcctgctagggtcctagcccctcctcgttcg                atcttag
                                                 *                                                          

Query   ILNSLKYVRPGNGYEPNFPVFEKCEVNGEKAHPLFKFLKESLPVPHDDPVSLMTDPKFIIWSPVCRSDIAWNFEKFLIGRDGVPFKRYSRKFETIKMKDD
        ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||/||||||/||
Target  ILNSLKYVRPGNGYEPNFPVFEKCEVNGENAHPLFKFLKESLPVPHDDPVSLMTDPKCIIWSPVCRSDIAWNFEKFLIGRDGVPFKRYSRRFETIKMQDD
        acatcatgccgagtgcatcgtgatggaggagccctatcagttcgccggcgtcaagcataattcgtcagagtatgatcagcgggctactaaatgaaaacgg
        ttactaatgcgagaacatcttaagatagaacacttattaactctcaaactcttcacagttgcctgggatcgataatttggagtctagagggtactataaa
        catcgatctactatgatctgtggtactgatttttcgcgaaagtcattttgtggctagcatgttgcctccagttagtcttttggtcatccaatatcggatc
                                                                                                            

Query   IEKLLQQNV
        ||||||| /
Target  IEKLLQQTI
        agaccccaa
        taattaact
        taggtgacc
                 
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 498 ; UGA-SECIS: 951

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = ULFQ01000052.1:subseq_4957572,102588_ Strand = + Positions = 53093 - 53160
 Found by:  Infernal (score=25.89) Covels (score=24.59)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -17.1

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ((((((((((--....{[[{((((((({((......--------...))})))))))}]]}.....-..))))))))))
 target  CAAAAUUUUA--UUUAUGAUGGUGCUUUUCUAAAUA--------CUUGGUAAGCACCUGAUGUACC-UUUAAAAUUUUG
                         ****           ^^^                       ****