_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 2e-17 Query name: gi|1002600198|ref|XP_015679173.1| PREDICTED: selenoprotein T [Protobothrops mucrosquamatus] Query range: 1-195 (total 195) Target: /data/www-rg/seblastian_results/403088495/tempfiles/temptarget.fasta Chromosome: ULFR01000017.1:subseq_19141158,103265_ Strand: + Positions: -Exon 1 43665 43801 -Exon 2 50044 50154 -Exon 3 50549 50675 -Exon 4 52122 52209 -Exon 5 53144 53265 Redox box: YES Query MKPILALLLLLAVGLSGAGAQPGGLPPGKKLRMAYATGPLLKFQIC <---Intron---> VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR ||| ||||||/||||||||||||||||||||||||||||||||||| < 6242bp > ||||||||||||||||||||||||||||||||||||| Target MKPTLALLLLVAVGLSGAGAQPGGLPPGKKLRMAYATGPLLKFQIC VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR aacacgcctcggggtaggggccggcccgaaccagtgagctcatcat gttgtacgtggtacgaacctcgacagggatccccata tacctctttttctgtggcgcacggtccgaatgtcaccgcttatatg tcggaggttaaatgttgagacatgtagaaatcactag gggcgggggggggcgcctgtgactgttggaacgccccgggcgcgc ttcaacgggtagcggttcggcaccctagacctcacat * Query <---Intron---> HIASFLSVFKLVLIGFIIVGKDPFALFGMQTPSIWQWGQENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEIT < 394bp > |||||||||||||||||||||||||||||||| ||||||||| < 1446bp > ||||||||||||||||||||||||||| Target HIASFLSVFKLVLIGFIIVGKDPFALFGMQTPGIWQWGQENK VYACMMVFFLSNMIENQCMSTGAFEIT cagttttgtacgcagtaaggagctgttgacacgatctgcgaa gtgtaagttcaaaagactataggtgaa atccttcttattttgttttgaactcttgtaccgtgaggaaaa tacgttttttgattaaagtccgctatc atactcgaccaagaacctttcgttttatcgatatcgggaaatg atttggtccgccgtgcgtgaatataat Query LND <---Intron---> VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMEQMPHHRS ||| < 934bp > |||||||||||||||||||||||||||||||||||||||| Target LND VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMEQMPHHRS tag gcgttacgtgccctacccgcacgagaacagcagcacccat ta atctgcatacgatcctaattattaaatatatataatcaagc at tcaggtgggtgtttcggattactttagactgtggagattaa Sequence until next stop: TAG * Distance CDS-SECIS: 592 ; UGA-SECIS: 1030 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFR01000017.1:subseq_19141158,103265_ Strand = + Positions = 53858 - 53941 Found by: Infernal (score=30.8) Covels (score=37.83) Stem2 length = 12 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -21.72 ..(((((((.........(((((((((((((((...............))))))))))))))).............))))))).. model uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc (((((((((.........{[[[((((((((((((.............))))))))))))]]]}.........-...))))))))) target CAACAUGAAUGAAAUAAAUGAAGGUCUGUACUGAAGACAGAAAGCUGUUGGUACAGACUGGAUGAUCUACUU-GUCUUCAUGUUG **** ****