------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFR01000044.1:subseq_7325246,100077_ Strand = - Positions = 95200 - 95121 Found by: Infernal (score=26.08) Covels (score=23.33) Stem2 length = 11 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -21.61 ..(((((((........(((((((((((((((...............)))))))))))))))...........))))))).. model uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc (((([(({(........{[[[(((((((((((.....-.........)))))))))))]]]}.......-...)}))])))) target CCUGGGUAUGGUAAAAAUGAAGUCCCUGGCCAGAAGC-UACGUCUGGUGGCCAGGGAUGGACAAAGACA-UUGAAACAUGGG **** ^^ **** ------- SECIS element -- id:2 -- grade:C ---- Chromosome = ULFR01000044.1:subseq_7325246,100077_ Strand = + Positions = 77394 - 77472 Found by: Infernal (score=12.49) Stem2 length = 8 Apical loop length = 27 Insertion in stem2 = 0, 0 Free Energy = -14.63 ..(((((((.......(((((((((((((((.......................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((((((---(((.{[[{{((((((((...........................))))))))}}]]}----.)))))))))).. target CAAGCAAUG---UUAAUGAUUUUUAUUUUAGACAUGUAUUGCAUUACUACUGCAGGAAAAUGGAUUGAU----CUGACAUUGCUAA **** **** ------- SECIS element -- id:3 -- grade:B ---- Chromosome = ULFR01000044.1:subseq_7325246,100077_ Strand = + Positions = 94809 - 94886 Found by: Infernal (score=12.27) Covels (score=1.04) Stem2 length = 9 Apical loop length = 19 Insertion in stem2 = 0, 1 Free Energy = -4.11 ..(((((((.......(((((((((((((((...................))))))))).))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc ...({(((((--(...{[[(((({(({(([(...................)]))}))}).)))]]}..--.)-)))))})... target UAUGCCUUGU--UCUGUGAGGAAUUGUUCAAAAGCUAAAGCUGUGAACUGUGGGCCAUUGUCUGAUAC--UA-ACAAGUCUGG **** ^^ ****