------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFR01000001.1:subseq_38258415,100107_ Strand = + Positions = 37342 - 37419 Found by: Infernal (score=12.99) Covels (score=17.23) Stem2 length = 11 Apical loop length = 21 Insertion in stem2 = 0, 0 Free Energy = -18.3 ..(((((((.......((((((((((.(((((...................))))).))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC----cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc ....(((((.--....([[{(((((((((((.....................)))))))))))}]])----....))))).... target AUACUGGAAU--AUUAUGAAGCGCAUCCAGAUAAAUCAGCAGUGCUGAUUUUUCUGGAUGUGCAGAA----AGCCUUUCAUAAU **** ^^^ **** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = ULFR01000001.1:subseq_38258415,100107_ Strand = + Positions = 638 - 706 Found by: Infernal (score=12.44) Covels (score=16.32) Stem2 length = 9 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -7.96 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(({((((.--....{[[[((({((((((......--.........))))))})))]]]}----..-.))))})).. target AGCACCAGAA--AGAAUGAAGUGACUGGGUCAAAGC--UAAAAUGACACUCAGCUGUGGAU----GU-AUCUGAUGGG **** ^^^ **** ------- SECIS element -- id:3 -- grade:B ---- Chromosome = ULFR01000001.1:subseq_38258415,100107_ Strand = + Positions = 35219 - 35298 Found by: Infernal (score=10.52) Stem2 length = 7 Apical loop length = 29 Insertion in stem2 = 0, 0 Free Energy = -12.95 ..(((((((.......((((((((((((.............................))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugg--------gccaggcCuGAUGuuuuuucaugaccggc ..(((((((.--....{[[(((((({((.............................))}))))))]]}..--.--.))))))).. target CGCAGGAUUU--AAAAUGAUGAGUUUGGUGGUCCCUGAGGUCCAAAAGGUUGGCGACCCUGAUUUAGAUGG--U--UAAUCCUGGA **** ****