_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 1e-37 Query name: gi|927181228|ref|XP_013926103.1| PREDICTED: methionine-R-sulfoxide reductase B1 isoform X1 [Thamnophis sirtalis] Query range: 1-118 (total 118) Target: /data/www-rg/seblastian_results/694488657/tempfiles/temptarget.fasta Chromosome: ULFR01000025.1:subseq_225892,101157_ Strand: - Positions: -Exon 1 51014 51226 -Exon 2 50002 50116 -Exon 3 48456 48481 Redox box: no Query MCAYLIPPCHIYSSFSPSPSLLTGIYVCSKCGYELFSSQSKFLHSSPWPAFTHPIHSDSISKYLERPGAFK <---Intron---> VSCGKCGNGLGHE |||||||| ||||| |||||||||||/|||||||||||||||||||||||||||||||||||||||||||| < 897bp > ||||||||||||| Target MCAYLIPPHHIYSSSSPSPSLLTGIYICSKCGYELFSSQSKFLHSSPWPAFTHPIHSDSISKYLERPGAFK VSCGKCGNGLGHE atgttaccccatttttctcttcagatattatgtgtttactatccttctcgtaccacagaatattgccggta gttgatgagcgcg tgcattccaataccccccccttcgtatgcaggaattcgacattacccgcctcactagagtcaatagcgcta tcggaggagtgaa gtctattattatttccatatgcatacttcacctaacccgcacttactgattctttccccccgcaacaatcg catcgtgtcgcta Query FLDDGPQKGQSRFUIFSSSLTFVHKA <---Intron---> QSGKNMEK ||||||||||||||||||||||| || < 1520bp > ||||||/| Target FLDDGPQKGQSRFUIFSSSLTFVPKA QSGKNMDK tcgggccagctcttataatcatgcag ctgaaaga ttaagcaagacgtgttggctcttca cacgaataa ccctccagcgttcaatcttcattta tatggcgca * Sequence until next stop: TAA * Distance CDS-SECIS: 1157 ; UGA-SECIS: 1217 ------- SECIS element -- id:1 -- grade:B ---- Chromosome = ULFR01000025.1:subseq_225892,101157_ Strand = - Positions = 47298 - 47223 Found by: Infernal (score=14.35) Covels (score=14.68) Stem2 length = 10 Apical loop length = 16 Insertion in stem2 = 1, 0 Free Energy = -12.61 ..(((((((..........((((((((((((.(((................)))))))))))))))........))))))).. model uucggucaugcg---UuaAUGAcGgccuggc-ccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc (({((((((..........([[[(((((((-.(((................)))-)))))))]]])----..-.))))))})) target CUGGUAUAGCAUCAUGGUAUGAAUUGCCCC-AUGUAAACCCAUUCUGGAAAGCA-GGGGUGAGGAA----CA-UCUAUAUGAG **** ^^^ ****