
genewise output
Score 956.62 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000019_1.0   40 PAPRWLAGLRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPT 
                     P PRWL+ LRFDNRALRALP++   P  E     PRPV GACF RV P  
                     PPPRWLSALRFDNRALRALPLD---PSEE---NVPRPVSGACFCRVLPA 
ULFR01000067.1-60908 cccctcagcctgacgccgcccg   cagg   agcccgtggtttcgccg 
                     cccggtgctgtaagctgctcta   cgaa   atcgctcgcgtggttcc 
                     gcgggcctggcccgtggtgggt   gcgg   cctgcggcccccgggcg 


SPP00000019_1.0   89 PLRQPRLVALSEPALALLGLGAPPAREAEAEAALFFSGNALLPGAEPAA 
                     P+R PRLVA S PALALLGL  P + E E EAAL+FSGN LLPGAEPAA 
                     PVRGPRLVASSAPALALLGLREPQSPEEEEEAALYFSGNRLLPGAEPAA 
ULFR01000067.1-60779 cgcgcccggttgcgcgccgcagccacgggggggcttagaccccgggcgg 
                     ctggcgttcccccctcttgtgacagcaaaaacctatggagttcgcaccc 
                     aggcggggtccggtgtggcggaggcgggaggcgccccgcggggagggcc 


SPP00000019_1.0  138 HCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFS   
                     HCYCGHQFG FAGQLGDGAAMYLGEV    GERWE+QLKGAG TPFS   
                     HCYCGHQFGSFAGQLGDGAAMYLGEVLNPRGERWEIQLKGAGLTPFS   
ULFR01000067.1-60632 ctttgcctgatggccgggggatcgggtaccggctgaccagggcactt   
                     agaggaatggtcgatgagcctatgattacggaggatatagcgtcctc   
                     ccccccgccctcgggcccgcgcgggggcgaggcggcgcgccacctcc   


SPP00000019_1.0  185                           QADGRKVLRSSIREFLCSEAMFH 
                                               QADGRKVLRSSIREFLCSEAMFH 
                                R:R[aga]       QADGRKVLRSSIREFLCSEAMFH 
ULFR01000067.1-60491 AGGTAAAGA  Intron 1   CAGAcgggcagcataaagtctaggatc 
                       <2-----[60489:57017]-2> acaggattgcgtgattggactta 
                                               aatctatgaccaaactctatgtt 


SPP00000019_1.0  209 LGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFI      
                     LG+PTTRAG CVTS+S V+RD+FYDGNPK E+CT+VLR+A TFI      
                     LGIPTTRAGTCVTSDSEVIRDIFYDGNPKKEKCTIVLRIAPTFI      
ULFR01000067.1-56946 cgacaaaggatgatgtggacgattggacaagataagcaagcata      
                     tgtcccgcgcgtccacattgattaagacaaaagctttgtccctt      
                     aaaaccaaggcaagtaattgtatttatcaaagtacaaaaaaatt      


SPP00000019_1.0  253                           FGSFEIFKSADEHTGRAGPSVGR 
                                               FGSFEIFKSADE TGR GPSV R 
                                R:R[agg]       FGSFEIFKSADEFTGRKGPSVDR 
ULFR01000067.1-56814 AGGTAATTG  Intron 2   CAGGtgttgatatgggtagcagcagga 
                       <2-----[56812:56317]-2> tgctattaccaatcggagcgtag 
                                               taatattatttataatatcctta 


SPP00000019_1.0  277 NDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE             
                     NDIR+Q+LDYVIS+FYP+I   H  + VQRNAAFFRE             
                     NDIRIQMLDYVISTFYPDILQTHPDNIVQRNAAFFRE             
ULFR01000067.1-56246 agaaacacgtgaaattcgaccaccgaagcaaggttcg             
                     aatgtattaattgctacattacacaattagaccttga             
                     cttatagtttgccactattaacctctttgacttctag             


SPP00000019_1.0  314                        VTRRTARMVAEWQCVGFCHGVLNTDN 
                                            V+RRTARMVAEWQCVGFCHGVLNTDN 
                                            VSRRTARMVAEWQCVGFCHGVLNTDN 
ULFR01000067.1-56135 GTAAGAG  Intron 3   AAGgtacagaagggtctggttcggcaaga 
                     <0-----[56135:55522]-0>tcggccgttcagagtgtgagttacaa 
                                            aaagacggttaggttattttgccatt 


SPP00000019_1.0  340 MSILGLTIDYGPFGFLD                          YDPDHV 
                     MS+LGLTIDYGPFGF+D                          YDP+H+ 
                     MSVLGLTIDYGPFGFMD           R:R[aga]       YDPEHI 
ULFR01000067.1-55443 aagcgcaagtgctgtagAGGTTAGTG  Intron 4   TAGAtgcgca 
                     tgttgtctaagctgtta  <2-----[55390:54202]-2> aacaat 
                     gtgtatatctattatgt                          cctact 


SPP00000019_1.0  364 CNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDA 
                     CN SDN+GRYAY+KQPE+C+WNL K AEAL PELPLE+   IL EE+DA 
                     CNGSDNSGRYAYNKQPEICKWNLTKFAEALVPELPLEISMPILEEEYDA 
ULFR01000067.1-54182 tagtgatgctgtaaccgatatacaatgggtgcgcccgaaacacgggtgg 
                     gagcaacggacaaaacatgagatcatcacttcatctatgtcttaaaaac 
                     ctattcaaactttgaagttggtacgttacacaataaaccgctgggacta 


SPP00000019_1.0  413 EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT            
                     EF++HYLQ MRRKLGL+Q++++ED  LV +LLETMH+T            
                     EFEKHYLQIMRRKLGLIQLQIDEDHKLVLELLETMHIT            
ULFR01000067.1-54035 gtgacttcaaaaacgtacccagggcacgtgctgaacaa            
                     ataaaatattggatgttatataaaaatttattactatc            
                     atagttgacgagaatatgtgatattggcgacggtgcca            


SPP00000019_1.0  451                           ADFTNTFYLLSSFPVELESPGLA 
                                               ADFTNTF LLSSFPV+ +   L  
                               G:G[ggt]        ADFTNTFRLLSSFPVDFDPLNLE 
ULFR01000067.1-53921 GGTGAGTA  Intron 5   TAGGTggtaaatcttattcggtgctacg 
                      <1-----[53920:53731]-1>  catcactgttgctctatactata 
                                               attattccggcattgttttacaa 


SPP00000019_1.0  475 EFLARLMEQCASLEELRLAFRPQMDP                        
                     EFL ++ +QCASLEEL++A++PQMDP                        
                     EFLDQISKQCASLEELKVAYKPQMDP           R:R[aga]     
ULFR01000067.1-53659 gtcgcatactgtcggtaggtaccagcAGGTATGTT  Intron 6     
                     attaatcaagcctaatatcaacatac  <2-----[53579:50654]  
                     gtgtgcaaatgaggagatctgtggtc                        


SPP00000019_1.0  501     QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE 
                         QLSMMLMLAQSNPQLFAL+GT++ I +ELER+EQ S+L+QL+A++ 
                         QLSMMLMLAQSNPQLFALFGTKSNINKELERIEQFSKLQQLTASD 
ULFR01000067.1-50656 TAGAcctaacatgctaccctgttgaataaaagtgcagcttaccctagtg 
                     -2> atctttttcacacattcttgcacataaatagtaatcataatccca 
                         atcggggaagtctactcataaattccgagaaaagctgggaaatct 


SPP00000019_1.0  547 LQSRNQGHWADWLQAY                          ARLDKDL 
                     L +RN+  W +WLQ Y                           RL+K++ 
                     LVNRNKKTWTNWLQKY           R:R[aga]       LRLEKEM 
ULFR01000067.1-50517 tgaaaaaataatccatAGGTGAGGT  Intron 7   CAGAcacgaga 
                     ttagaaacgcagtaaa  <2-----[50467:50160]-2> tgtaaat 
                     actataacgatggggc                          tgaagag 


SPP00000019_1.0  571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE     
                     E       W  E +++M A+NPKY+LRNYIAQ AIEAAE GDF E     
                     EHISYTDTWNEERLKIMKASNPKYILRNYIAQRAIEAAENGDFLE     
ULFR01000067.1-50137 gcaatagataggccaaaagaacatataatagcagaggggaggtcg     
                     aatgacacgaaagtattacgacaattgaatcagctaccaagatta     
                     actcttcggtggcgatggcctaataggccttagttaaaattctag     


SPP00000019_1.0  616                        VRRVLKLLETPYHCEAG--------- 
                                            VRRVLK+LE PY    G          
                                            VRRVLKVLERPYEDSEGFLEASEERE 
ULFR01000067.1-50002 GTAAGCA  Intron 8   CAGgacgtagcgactggtggtcggtggag 
                     <0-----[50002:49705]-0>tggttattagcaaacagttaccaaga 
                                            gagcgacaagatataaccggctgggg 


SPP00000019_1.0  633 ------AATDAEATEADGADGRQRSYSSKPPLWAAELCVT          
                           AA  A AT + G   R   YS+KPPLWA+ELCVT          
                     EEEIGMAAASAAATCSSGTQER-IPYSNKPPLWASELCVT          
ULFR01000067.1-49626 gggagagggtgggatatgacga actaaaccctgtgctga          
                     aaatgtccccccccggcgcaag tcagaacctgccatgtc          
                     gaatggattttttcccaacgaa tatccgtacgctgctga          


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>ULFR01000067.1:subseq(3211929,110908).pep
PPPRWLSALRFDNRALRALPLDPSEENVPRPVSGACFCRVLPAPVRGPRLVASSAPALAL
LGLREPQSPEEEEEAALYFSGNRLLPGAEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLN
PRGERWEIQLKGAGLTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSE
VIRDIFYDGNPKKEKCTIVLRIAPTFIRFGSFEIFKSADEFTGRKGPSVDRNDIRIQMLD
YVISTFYPDILQTHPDNIVQRNAAFFREVSRRTARMVAEWQCVGFCHGVLNTDNMSVLGL
TIDYGPFGFMDRYDPEHICNGSDNSGRYAYNKQPEICKWNLTKFAEALVPELPLEISMPI
LEEEYDAEFEKHYLQIMRRKLGLIQLQIDEDHKLVLELLETMHITGADFTNTFRLLSSFP
VDFDPLNLEEFLDQISKQCASLEELKVAYKPQMDPRQLSMMLMLAQSNPQLFALFGTKSN
INKELERIEQFSKLQQLTASDLVNRNKKTWTNWLQKYRLRLEKEMEHISYTDTWNEERLK
IMKASNPKYILRNYIAQRAIEAAENGDFLEVRRVLKVLERPYEDSEGFLEASEEREEEEI
GMAAASAAATCSSGTQERIPYSNKPPLWASELCVT
//
>ULFR01000067.1:subseq(3211929,110908).[60908:49508].sp
CCGCCCCCGCGGTGGCTCAGCGCTCTGCGGTTCGACAACCGGGCTCTGCGGGCTCTGCCG
CTGGATCCGAGCGAGGAGAACGTCCCTCGGCCCGTGTCGGGCGCCTGCTTCTGCCGGGTG
CTGCCCGCGCCAGTGCGGGGCCCGCGGCTGGTGGCTTCCTCCGCGCCGGCTCTGGCTCTG
CTGGGCCTGAGGGAACCGCAGAGCCCGGAGGAGGAAGAGGAGGCCGCGCTCTACTTCAGC
GGGAACCGGCTGCTGCCGGGAGCGGAGCCGGCCGCCCACTGCTACTGCGGCCACCAGTTC
GGCAGCTTTGCCGGGCAGCTGGGCGACGGCGCGGCCATGTACCTGGGGGAGGTGTTGAAC
CCGCGAGGGGAGCGCTGGGAGATCCAGCTCAAGGGCGCCGGACTCACCCCTTTCTCCAGA
CAAGCAGATGGCCGTAAAGTTCTGAGATCCAGCATAAGAGAATTCCTTTGCAGTGAAGCT
ATGTTTCATCTAGGAATACCAACCACCAGAGCAGGGACGTGCGTAACATCGGATTCAGAA
GTTATTCGGGATATATTTTATGATGGAAATCCCAAAAAAGAAAAGTGTACAATCGTACTA
AGAATAGCACCAACATTTATTAGGTTTGGATCATTTGAAATTTTTAAATCTGCTGATGAA
TTTACAGGACGTAAAGGTCCCAGCGTTGATAGAAACGATATTAGAATTCAAATGCTTGAT
TATGTGATCAGCACATTCTATCCAGATATTCTACAAACCCACCCTGACAATATTGTTCAG
AGAAACGCTGCTTTCTTTCGAGAGGTATCAAGACGGACAGCCAGGATGGTTGCTGAATGG
CAGTGTGTTGGATTTTGTCATGGTGTGCTCAACACAGATAATATGAGTGTGCTTGGACTT
ACAATTGACTATGGACCTTTTGGATTTATGGATAGATACGACCCTGAACACATTTGCAAT
GGATCTGATAACTCAGGACGATACGCTTATAATAAGCAACCAGAGATTTGTAAGTGGAAT
CTAACCAAGTTTGCTGAAGCCTTAGTCCCAGAACTTCCACTAGAAATCAGCATGCCCATT
CTGGAGGAGGAATACGATGCAGAATTTGAAAAGCATTATTTGCAAATCATGAGAAGGAAA
CTAGGTTTAATTCAGCTTCAGATAGATGAAGATCATAAGCTGGTCTTGGAACTCTTGGAG
ACTATGCACATCACAGGTGCAGATTTTACAAATACTTTCCGCTTGTTGAGCTCATTTCCT
GTGGATTTTGATCCTTTAAACCTAGAAGAGTTTCTGGATCAGATCTCAAAACAATGTGCG
TCACTGGAGGAATTGAAAGTTGCCTATAAGCCTCAGATGGATCCCAGACAACTTTCCATG
ATGCTGATGTTAGCACAGTCTAACCCTCAACTCTTTGCCTTATTTGGAACAAAATCTAAT
ATCAACAAGGAATTGGAACGAATAGAACAGTTCTCTAAGCTGCAGCAATTAACAGCTTCC
GATTTAGTCAATAGAAATAAAAAAACCTGGACAAATTGGCTGCAGAAGTACAGACTTAGG
CTAGAAAAGGAAATGGAACACATTAGCTATACTGACACGTGGAATGAGGAGCGCCTGAAA
ATTATGAAGGCCAGCAATCCAAAATATATATTGAGGAACTACATTGCTCAAAGGGCTATT
GAAGCAGCAGAAAATGGTGACTTTCTAGAGGTGAGACGGGTCTTGAAAGTCCTAGAAAGG
CCATATGAAGATTCAGAAGGCTTCCTGGAGGCCTCTGAGGAGAGGGAGGAGGAAGAAATT
GGGATGGCAGCTGCTTCTGCTGCTGCTACCTGCAGCTCAGGAACCCAGGAAAGAATTCCA
TATAGCAACAAGCCTCCACTCTGGGCCTCTGAGCTCTGTGTGACA
//
ULFR01000067.1:subseq(3211929,110908)	GeneWise	match	60908	49510	974.59	-	.	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	cds	60908	60490	0.00	-	0	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	intron	60489	57017	0.00	-	.	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	cds	57016	56813	0.00	-	1	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	intron	56812	56317	0.00	-	.	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	cds	56316	56136	0.00	-	1	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	intron	56135	55522	0.00	-	.	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	cds	55521	55391	0.00	-	0	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	intron	55390	54202	0.00	-	.	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	cds	54201	53921	0.00	-	1	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	intron	53920	53731	0.00	-	.	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	cds	53730	53580	0.00	-	2	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	intron	53579	50654	0.00	-	.	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	cds	50653	50468	0.00	-	1	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	intron	50467	50160	0.00	-	.	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	cds	50159	50003	0.00	-	1	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	intron	50002	49705	0.00	-	.	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
ULFR01000067.1:subseq(3211929,110908)	GeneWise	cds	49704	49510	0.00	-	0	ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1
//
