genewise output Score 956.62 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000019_1.0 40 PAPRWLAGLRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPT P PRWL+ LRFDNRALRALP++ P E PRPV GACF RV P PPPRWLSALRFDNRALRALPLD---PSEE---NVPRPVSGACFCRVLPA ULFR01000067.1-60908 cccctcagcctgacgccgcccg cagg agcccgtggtttcgccg cccggtgctgtaagctgctcta cgaa atcgctcgcgtggttcc gcgggcctggcccgtggtgggt gcgg cctgcggcccccgggcg SPP00000019_1.0 89 PLRQPRLVALSEPALALLGLGAPPAREAEAEAALFFSGNALLPGAEPAA P+R PRLVA S PALALLGL P + E E EAAL+FSGN LLPGAEPAA PVRGPRLVASSAPALALLGLREPQSPEEEEEAALYFSGNRLLPGAEPAA ULFR01000067.1-60779 cgcgcccggttgcgcgccgcagccacgggggggcttagaccccgggcgg ctggcgttcccccctcttgtgacagcaaaaacctatggagttcgcaccc aggcggggtccggtgtggcggaggcgggaggcgccccgcggggagggcc SPP00000019_1.0 138 HCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFS HCYCGHQFG FAGQLGDGAAMYLGEV GERWE+QLKGAG TPFS HCYCGHQFGSFAGQLGDGAAMYLGEVLNPRGERWEIQLKGAGLTPFS ULFR01000067.1-60632 ctttgcctgatggccgggggatcgggtaccggctgaccagggcactt agaggaatggtcgatgagcctatgattacggaggatatagcgtcctc ccccccgccctcgggcccgcgcgggggcgaggcggcgcgccacctcc SPP00000019_1.0 185 QADGRKVLRSSIREFLCSEAMFH QADGRKVLRSSIREFLCSEAMFH R:R[aga] QADGRKVLRSSIREFLCSEAMFH ULFR01000067.1-60491 AGGTAAAGA Intron 1 CAGAcgggcagcataaagtctaggatc <2-----[60489:57017]-2> acaggattgcgtgattggactta aatctatgaccaaactctatgtt SPP00000019_1.0 209 LGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFI LG+PTTRAG CVTS+S V+RD+FYDGNPK E+CT+VLR+A TFI LGIPTTRAGTCVTSDSEVIRDIFYDGNPKKEKCTIVLRIAPTFI ULFR01000067.1-56946 cgacaaaggatgatgtggacgattggacaagataagcaagcata tgtcccgcgcgtccacattgattaagacaaaagctttgtccctt aaaaccaaggcaagtaattgtatttatcaaagtacaaaaaaatt SPP00000019_1.0 253 FGSFEIFKSADEHTGRAGPSVGR FGSFEIFKSADE TGR GPSV R R:R[agg] FGSFEIFKSADEFTGRKGPSVDR ULFR01000067.1-56814 AGGTAATTG Intron 2 CAGGtgttgatatgggtagcagcagga <2-----[56812:56317]-2> tgctattaccaatcggagcgtag taatattatttataatatcctta SPP00000019_1.0 277 NDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE NDIR+Q+LDYVIS+FYP+I H + VQRNAAFFRE NDIRIQMLDYVISTFYPDILQTHPDNIVQRNAAFFRE ULFR01000067.1-56246 agaaacacgtgaaattcgaccaccgaagcaaggttcg aatgtattaattgctacattacacaattagaccttga cttatagtttgccactattaacctctttgacttctag SPP00000019_1.0 314 VTRRTARMVAEWQCVGFCHGVLNTDN V+RRTARMVAEWQCVGFCHGVLNTDN VSRRTARMVAEWQCVGFCHGVLNTDN ULFR01000067.1-56135 GTAAGAG Intron 3 AAGgtacagaagggtctggttcggcaaga <0-----[56135:55522]-0>tcggccgttcagagtgtgagttacaa aaagacggttaggttattttgccatt SPP00000019_1.0 340 MSILGLTIDYGPFGFLD YDPDHV MS+LGLTIDYGPFGF+D YDP+H+ MSVLGLTIDYGPFGFMD R:R[aga] YDPEHI ULFR01000067.1-55443 aagcgcaagtgctgtagAGGTTAGTG Intron 4 TAGAtgcgca tgttgtctaagctgtta <2-----[55390:54202]-2> aacaat gtgtatatctattatgt cctact SPP00000019_1.0 364 CNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDA CN SDN+GRYAY+KQPE+C+WNL K AEAL PELPLE+ IL EE+DA CNGSDNSGRYAYNKQPEICKWNLTKFAEALVPELPLEISMPILEEEYDA ULFR01000067.1-54182 tagtgatgctgtaaccgatatacaatgggtgcgcccgaaacacgggtgg gagcaacggacaaaacatgagatcatcacttcatctatgtcttaaaaac ctattcaaactttgaagttggtacgttacacaataaaccgctgggacta SPP00000019_1.0 413 EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT EF++HYLQ MRRKLGL+Q++++ED LV +LLETMH+T EFEKHYLQIMRRKLGLIQLQIDEDHKLVLELLETMHIT ULFR01000067.1-54035 gtgacttcaaaaacgtacccagggcacgtgctgaacaa ataaaatattggatgttatataaaaatttattactatc atagttgacgagaatatgtgatattggcgacggtgcca SPP00000019_1.0 451 ADFTNTFYLLSSFPVELESPGLA ADFTNTF LLSSFPV+ + L G:G[ggt] ADFTNTFRLLSSFPVDFDPLNLE ULFR01000067.1-53921 GGTGAGTA Intron 5 TAGGTggtaaatcttattcggtgctacg <1-----[53920:53731]-1> catcactgttgctctatactata attattccggcattgttttacaa SPP00000019_1.0 475 EFLARLMEQCASLEELRLAFRPQMDP EFL ++ +QCASLEEL++A++PQMDP EFLDQISKQCASLEELKVAYKPQMDP R:R[aga] ULFR01000067.1-53659 gtcgcatactgtcggtaggtaccagcAGGTATGTT Intron 6 attaatcaagcctaatatcaacatac <2-----[53579:50654] gtgtgcaaatgaggagatctgtggtc SPP00000019_1.0 501 QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE QLSMMLMLAQSNPQLFAL+GT++ I +ELER+EQ S+L+QL+A++ QLSMMLMLAQSNPQLFALFGTKSNINKELERIEQFSKLQQLTASD ULFR01000067.1-50656 TAGAcctaacatgctaccctgttgaataaaagtgcagcttaccctagtg -2> atctttttcacacattcttgcacataaatagtaatcataatccca atcggggaagtctactcataaattccgagaaaagctgggaaatct SPP00000019_1.0 547 LQSRNQGHWADWLQAY ARLDKDL L +RN+ W +WLQ Y RL+K++ LVNRNKKTWTNWLQKY R:R[aga] LRLEKEM ULFR01000067.1-50517 tgaaaaaataatccatAGGTGAGGT Intron 7 CAGAcacgaga ttagaaacgcagtaaa <2-----[50467:50160]-2> tgtaaat actataacgatggggc tgaagag SPP00000019_1.0 571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE E W E +++M A+NPKY+LRNYIAQ AIEAAE GDF E EHISYTDTWNEERLKIMKASNPKYILRNYIAQRAIEAAENGDFLE ULFR01000067.1-50137 gcaatagataggccaaaagaacatataatagcagaggggaggtcg aatgacacgaaagtattacgacaattgaatcagctaccaagatta actcttcggtggcgatggcctaataggccttagttaaaattctag SPP00000019_1.0 616 VRRVLKLLETPYHCEAG--------- VRRVLK+LE PY G VRRVLKVLERPYEDSEGFLEASEERE ULFR01000067.1-50002 GTAAGCA Intron 8 CAGgacgtagcgactggtggtcggtggag <0-----[50002:49705]-0>tggttattagcaaacagttaccaaga gagcgacaagatataaccggctgggg SPP00000019_1.0 633 ------AATDAEATEADGADGRQRSYSSKPPLWAAELCVT AA A AT + G R YS+KPPLWA+ELCVT EEEIGMAAASAAATCSSGTQER-IPYSNKPPLWASELCVT ULFR01000067.1-49626 gggagagggtgggatatgacga actaaaccctgtgctga aaatgtccccccccggcgcaag tcagaacctgccatgtc gaatggattttttcccaacgaa tatccgtacgctgctga // Making a R in phase 2 intron Making a R in phase 2 intron Making a R in phase 2 intron Making a G in phase 1 intron Making a R in phase 2 intron Making a R in phase 2 intron >ULFR01000067.1:subseq(3211929,110908).pep PPPRWLSALRFDNRALRALPLDPSEENVPRPVSGACFCRVLPAPVRGPRLVASSAPALAL LGLREPQSPEEEEEAALYFSGNRLLPGAEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLN PRGERWEIQLKGAGLTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSE VIRDIFYDGNPKKEKCTIVLRIAPTFIRFGSFEIFKSADEFTGRKGPSVDRNDIRIQMLD YVISTFYPDILQTHPDNIVQRNAAFFREVSRRTARMVAEWQCVGFCHGVLNTDNMSVLGL TIDYGPFGFMDRYDPEHICNGSDNSGRYAYNKQPEICKWNLTKFAEALVPELPLEISMPI LEEEYDAEFEKHYLQIMRRKLGLIQLQIDEDHKLVLELLETMHITGADFTNTFRLLSSFP VDFDPLNLEEFLDQISKQCASLEELKVAYKPQMDPRQLSMMLMLAQSNPQLFALFGTKSN INKELERIEQFSKLQQLTASDLVNRNKKTWTNWLQKYRLRLEKEMEHISYTDTWNEERLK IMKASNPKYILRNYIAQRAIEAAENGDFLEVRRVLKVLERPYEDSEGFLEASEEREEEEI GMAAASAAATCSSGTQERIPYSNKPPLWASELCVT // >ULFR01000067.1:subseq(3211929,110908).[60908:49508].sp CCGCCCCCGCGGTGGCTCAGCGCTCTGCGGTTCGACAACCGGGCTCTGCGGGCTCTGCCG CTGGATCCGAGCGAGGAGAACGTCCCTCGGCCCGTGTCGGGCGCCTGCTTCTGCCGGGTG CTGCCCGCGCCAGTGCGGGGCCCGCGGCTGGTGGCTTCCTCCGCGCCGGCTCTGGCTCTG CTGGGCCTGAGGGAACCGCAGAGCCCGGAGGAGGAAGAGGAGGCCGCGCTCTACTTCAGC GGGAACCGGCTGCTGCCGGGAGCGGAGCCGGCCGCCCACTGCTACTGCGGCCACCAGTTC GGCAGCTTTGCCGGGCAGCTGGGCGACGGCGCGGCCATGTACCTGGGGGAGGTGTTGAAC CCGCGAGGGGAGCGCTGGGAGATCCAGCTCAAGGGCGCCGGACTCACCCCTTTCTCCAGA CAAGCAGATGGCCGTAAAGTTCTGAGATCCAGCATAAGAGAATTCCTTTGCAGTGAAGCT ATGTTTCATCTAGGAATACCAACCACCAGAGCAGGGACGTGCGTAACATCGGATTCAGAA GTTATTCGGGATATATTTTATGATGGAAATCCCAAAAAAGAAAAGTGTACAATCGTACTA AGAATAGCACCAACATTTATTAGGTTTGGATCATTTGAAATTTTTAAATCTGCTGATGAA TTTACAGGACGTAAAGGTCCCAGCGTTGATAGAAACGATATTAGAATTCAAATGCTTGAT TATGTGATCAGCACATTCTATCCAGATATTCTACAAACCCACCCTGACAATATTGTTCAG AGAAACGCTGCTTTCTTTCGAGAGGTATCAAGACGGACAGCCAGGATGGTTGCTGAATGG CAGTGTGTTGGATTTTGTCATGGTGTGCTCAACACAGATAATATGAGTGTGCTTGGACTT ACAATTGACTATGGACCTTTTGGATTTATGGATAGATACGACCCTGAACACATTTGCAAT GGATCTGATAACTCAGGACGATACGCTTATAATAAGCAACCAGAGATTTGTAAGTGGAAT CTAACCAAGTTTGCTGAAGCCTTAGTCCCAGAACTTCCACTAGAAATCAGCATGCCCATT CTGGAGGAGGAATACGATGCAGAATTTGAAAAGCATTATTTGCAAATCATGAGAAGGAAA CTAGGTTTAATTCAGCTTCAGATAGATGAAGATCATAAGCTGGTCTTGGAACTCTTGGAG ACTATGCACATCACAGGTGCAGATTTTACAAATACTTTCCGCTTGTTGAGCTCATTTCCT GTGGATTTTGATCCTTTAAACCTAGAAGAGTTTCTGGATCAGATCTCAAAACAATGTGCG TCACTGGAGGAATTGAAAGTTGCCTATAAGCCTCAGATGGATCCCAGACAACTTTCCATG ATGCTGATGTTAGCACAGTCTAACCCTCAACTCTTTGCCTTATTTGGAACAAAATCTAAT ATCAACAAGGAATTGGAACGAATAGAACAGTTCTCTAAGCTGCAGCAATTAACAGCTTCC GATTTAGTCAATAGAAATAAAAAAACCTGGACAAATTGGCTGCAGAAGTACAGACTTAGG CTAGAAAAGGAAATGGAACACATTAGCTATACTGACACGTGGAATGAGGAGCGCCTGAAA ATTATGAAGGCCAGCAATCCAAAATATATATTGAGGAACTACATTGCTCAAAGGGCTATT GAAGCAGCAGAAAATGGTGACTTTCTAGAGGTGAGACGGGTCTTGAAAGTCCTAGAAAGG CCATATGAAGATTCAGAAGGCTTCCTGGAGGCCTCTGAGGAGAGGGAGGAGGAAGAAATT GGGATGGCAGCTGCTTCTGCTGCTGCTACCTGCAGCTCAGGAACCCAGGAAAGAATTCCA TATAGCAACAAGCCTCCACTCTGGGCCTCTGAGCTCTGTGTGACA // ULFR01000067.1:subseq(3211929,110908) GeneWise match 60908 49510 974.59 - . ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise cds 60908 60490 0.00 - 0 ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise intron 60489 57017 0.00 - . ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise cds 57016 56813 0.00 - 1 ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise intron 56812 56317 0.00 - . ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise cds 56316 56136 0.00 - 1 ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise intron 56135 55522 0.00 - . ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise cds 55521 55391 0.00 - 0 ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise intron 55390 54202 0.00 - . ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise cds 54201 53921 0.00 - 1 ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise intron 53920 53731 0.00 - . ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise cds 53730 53580 0.00 - 2 ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise intron 53579 50654 0.00 - . ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise cds 50653 50468 0.00 - 1 ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise intron 50467 50160 0.00 - . ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise cds 50159 50003 0.00 - 1 ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise intron 50002 49705 0.00 - . ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 ULFR01000067.1:subseq(3211929,110908) GeneWise cds 49704 49510 0.00 - 0 ULFR01000067.1:subseq(3211929,110908)-genewise-prediction-1 //