_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 1e-12 Query name: gi|1004662948|ref|XP_007422408.2| PREDICTED: ethanolaminephosphotransferase 1 [Python bivittatus] Query range: 20-407 (total 407) Target: /data/www-rg/seblastian_results/557664631/tempfiles/temptarget.fasta Chromosome: ULFR01000041.1:subseq_11128662,120478_ Strand: - Positions: -Exon 1 70410 70478 -Exon 2 69969 70077 -Exon 3 57865 57939 -Exon 4 56740 57002 -Exon 5 53331 53439 -Exon 6 50470 50518 -Exon 7 50030 50210 -Exon 8 48185 48367 -Exon 9 46338 46463 Redox box: no Query YSAVDNNPLSLYVMHPFWNTVVK <---Intron---> IFPKWLAPNLITFSGFLLLVFNFFLMAYFDPDFYASA <---Intron---> PDQKHVPN ||||||||||||||||||||||| < 332bp > ||||||||||||||||||||||||||||||||||||| < 12029bp > | |||||| Target YSAVDNNPLSLYVMHPFWNTVVK IFPKWLAPNLITFSGFLLLVFNFFLMAYFDPDFYASA PGQKHVPN tagggaacctctgaccttaagga atcatcgcataattgttccgtattcagttgcgttgtg cgcacgca agctaaactctattactgactta ttcagtccattctcgttttttattttcatacatacc ccgaaatca cttgcccttcgtcgtgtgctatg tttgggcatgagtttcgatcccctcgactctttttt aacagctac Query KVWVIVGLLNFAAYTLD <---Intron---> GVDGKQARRTQSSSPLGELFDHGLDSWACMFFVVTVYSTFGRGSNGVSVFVLYLLLWVVLFSFILSH |||/||||||||||||| < 862bp > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Target KVWIIVGLLNFAAYTLD GVDGKQARRTQSSSPLGELFDHGLDSWACMFFVVTVYSTFGRGSNGVSVFVLYLLLWVVLFSFILSH agtaaggccatggtacg ggggacgccactatccggctgcgcgatgtattggagttatgcgtaggagtgctccctggttttactc atgtttgttatccact agtagaacggcacgcctgattaagtaggcgtttttctacctgggcagtgttttatttgttttctttca aagcagtccctgttta ttgtaaaatccacccatgactctcgccgtcgctggcgctatcaacttccttcccgtcggtgcacctct Query WEKYNTGILFLPWGYDISQV <---Intron---> TISVVYIVTSIIGVEAWYNPFMFHFLYKDLFVTMIIG <---Intron---> CALTVTIPMSL |||||||||||||||||||| < 3300bp > |||||||||||||||||||||/|||||||||| |||| < 2812bp > || |||||||| Target WEKYNTGILFLPWGYDISQV TISVVYIVTSIIGVEAWYNPFLFHFLYKDLFVAMIIG CAFTVTIPMSL tgataagacttctgtgaacg aatggtagataaggggttactctctttagctggaaag tgtagaacaat gaaaacgttttcggaatgat ctcttattccttgtacgaactttattaaatttcttt ggctctctctgt gggttagtccgtgcctccgg ctagaccgaccaaggcgcctcgtttatacgctagtt ttgttgctcgtg Query NNYYK <---Intron---> AYANGTLKHHSFYEAVLPFFSPLLLFILCTVWIFQSPSDILETHPRLFYFMVGTAFANIS <---Intron---> CRL /|||| < 259bp > ||| |||||||||||/||| ||/||||||| ||||||/||||||||/||||||||||||| < 1662bp > |/| Target SNYYK AYAKGTLKHHSFYEAMLPFLSPVLLFILCTTWIFQSPTDILETHPRIFYFMVGTAFANIS CQL aatta gtgagacacctttggacctctcgcctattaatatctcagacgacccatttaggagtgaat tct gaaaa cacagctaaactaacttcttccttttttgccgttacccattacacgttatttgcctcatc gat ctcc actcacccgcccctacggtccgacctctgcctgccgaaatcggctaccctcgtgaccatct tag Query IVSQMSSTRCQPLNWMLLPLALVILVVISGLVPEQETVLLYLVTIFITLAHIHYGVNV <---Intron---> VRQLSKHFNIRTFSLQKPSSDULDME |||||||||||||||/|||||||||/|/| //||||| ||||/||||||||||||||| < 1721bp > ||||||||||/|||||||||||| || Target IVSQMSSTRCQPLNWLLLPLALVILIVMSDVLPEQETNLLYLITIFITLAHIHYGVNV VRQLSKHFNIQTFSLQKPSSDULGME agacaaaactcctatcccccgcgacagatggccgcgaaccttaaataatgcactggag gaccaactaacatttcacatgtcgag ttgatggcggactagtttctctttttttcattcaaacattattctttctcataagtat tgatgaatatactctaacgcagtgta cctggcctatgggcggttatgttctaggacgaaagagtcctacctccggactttactg gggttaccccacttaagccttaacga * Query KASVEENFSLRSSEAL | | ||| |||||||| Target KGSSEENVSLRSSEAL agttggagaccttggc agccaaatgtgccact gaaagacccggtagag Sequence until next stop: TAA * Distance CDS-SECIS: 927 ; UGA-SECIS: 987 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = ULFR01000041.1:subseq_11128662,120478_ Strand = - Positions = 45410 - 45329 Found by: Infernal (score=29.66) Covels (score=16.37) Stem2 length = 10 Apical loop length = 19 Insertion in stem2 = 0, 0 Free Energy = -17.37 ..(((((((.......(((((((((((((((...................))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ..([(((((.......([[[({(((((((((...................)))))))))})]]]).....-...)))))]).. target UAUAUGUGUGCUUAAAUGAAGAGUGCAGCCUAAACCCAUUUUUCUUAGAAAGGUUGCACCCGGAAAAAAG-CGAGCACAGAAU **** ^^^ ****