_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 1e-12 Query name: gi|1002602710|ref|XP_015680505.1| PREDICTED: selenoprotein H isoform X2 [Protobothrops mucrosquamatus] Query range: 1-130 (total 131) Target: /data/www-rg/seblastian_results/548034052/tempfiles/temptarget.fasta Chromosome: ULFR01000127.1:subseq_1304786,104569_ Strand: + Positions: -Exon 1 48680 48828 -Exon 2 49990 50135 -Exon 3 54484 54578 Redox box: YES Query MPPKGRKRKAAIPQAEATASSGEGANDVKKLPKIRKNEGPGDLHVTIEHC <---Intron---> KSURVFGRRAEAVSQELGLAFPDILVEVNLEKPR |||||||||| |||||||||/||| /||||||||/| || |||||||||| < 1161bp > |||||||| |||/|||| |||||| ||||||||| Target MPPKGRKRKAKIPQAEATASNGEGTSDVKKLPKIQKTEGSGDLHVTIEHC KSURVFGRTAEAISQELCLAFPDICVEVNLEKPR accagcaaagaaccgggagtagggaaggaatcaacaaggtggccgaagct aatcgtgcagggaacgctcgtcgatgggacgacc tccaggagacatcacaccccagagcgataatcataacagcgatatctaag agggttggccactgaatgtctcatgtatataacg gtcggaaggagttaaacaactagactttaagcgcggtaagacttgctgc tacaactacatgtccaggcgcttcctggcctaacg * Query RNSFEVVLLKKDGTK <---Intron---> IELWSGLKKGPPRKLKFPEPSNIVEMVKCNL ||||||||||||||| < 4348bp > |||||||||||||||||||||/|||||| || Target RNSFEVVLLKKDGTK IELWSGLKKGPPRKLKFPEPSHIVEMVKLNL aaatgggctaaggaa agctagcaagcccatatcgcacaggagacat gagtattttaaagc atatgggtaagccgatatcacgattattatat atctagtcgagtcc aagagtttaagaccagacaacccctagggcca Sequence until next stop: CTAAAGTCAACAGTGATGGAGTAG L K S T V M E * Distance CDS-SECIS: 566 ; UGA-SECIS: 797 ------- SECIS element -- id:1 -- grade:B ---- Chromosome = ULFR01000127.1:subseq_1304786,104569_ Strand = + Positions = 55145 - 55233 Found by: Infernal (score=17.47) Covels (score=14.85) Stem2 length = 10 Apical loop length = 22 Insertion in stem2 = 0, 0 Free Energy = -7.66 ..(((((((.........(((((((((((((((....................))))))))))))))).............))))))).. model uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuu----u-uuucaugaccggc .({({({{((........([[{((((((((((......................))))))))))}]]).........-..))}})})}). target UGUGAACUGGAGCAUUCAUGAUGAGAUAUGAUGAAGUGGGGUAAAGAAACUCUGGUCGUAUCUCUGAAACUGCUGCC-CGCCCCUCCUUU **** ^^ ****