
genewise output
Score 266.41 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000012_1.0   47 AAKHHVNGNRTVEPFPEGTQMAVF                          
                     AA H VN N T  PFPEG Q+A+F                          
                     AAVHAVNNNPTYPPFPEGMQVAIF          G:G[ggc]        
ULFR01000020.1:49635 gggcggaaacatcctcggacggatGGTGAGTG  Intron 1        
                     cctactaaaccacctcagtatctt <1-----[49708:50000]     
                     atcttccctgatcatcaagagaat                          


SPP00000012_1.0   71      MGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS      
                          MGCFWGAE+ FW L GV+STQVGF+GG+T+NPTY+EVCS      
                          MGCFWGAEKMFWKLPGVFSTQVGFSGGFTANPTYQEVCS      
ULFR01000020.1:49998 CAGGCagtttgggaattaccggttacggttggtagacatcggta      
                     -1>  tggtggcaattgatcgttccatgtcggtccaccaaatgg      
                          gatcgaaaagtgagggcccaggacaacctcttccaaccc      


SPP00000012_1.0  111                           KTGHAEVVRVVYQPEHMSFEELL 
                                                TGHAEVVRVV+ P+ +S+E+LL 
                               E:G[ggg]        MTGHAEVVRVVFDPQKISYEKLL 
ULFR01000020.1:50120 GGTAAGTC  Intron 2   TAGGGaagcggggcggtgccaaatgacc 
                      <1-----[50121:54217]-1>  tcgacattgtttacaatgaaatt 
                                               ggatgggctagtcaggcctagcc 


SPP00000012_1.0  135 KVFWENHDPTQ                          MRQGNDHGTQYR 
                     + FWENHDPTQ                          M+Q  D GTQYR 
                     RFFWENHDPTQ          G:G[gga]        MKQYEDFGTQYR 
ULFR01000020.1:54289 ctttgacgcacGGTAAAAT  Intron 3   CAGGAaactggtgactc 
                     gttgaaaacca <1-----[54323:62173]-1>  taaaaatgcaag 
                     atcggtctaca                          gggtactcagtc 


SPP00000012_1.0  159 SAIYPTSAKQMEAALSSKENYQK                       VLS 
                     SAIY   A+Q+E+AL SK  Y++                        L+ 
                     SAIYTIGAEQLESALRSKAMYEQ                       ELA 
ULFR01000020.1:62212 tgataagggccgtgtatagatgcGTATAGG  Intron 4   CAGgtg 
                     cctactgcaatacctgcactaaa<0-----[62281:80025]-0>atc 
                     gcccacaaaagattaacgagtag                       ggt 


SPP00000012_1.0  185 EHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVG  
                     +  +GPITT+I E   FYYAEDYHQQYL KNP+G+CGL GTGV+CP+G  
                     KKQLGPITTEIWEASEFYYAEDYHQQYLHKNPDGFCGLQGTGVACPIG  
ULFR01000020.1:80035 aaccgcaaagatggagtttgggtccctccaacggttgccgagggtcag  
                     aaatgctccatgacgataacaaaaaaataaacagtggtagcgtcgctg  
                     ggaggaagggcggtcaccccatccgatgcacgtctccgactcgcccac  


//
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
>ULFR01000020.1:subseq(4187109,130178).pep
AAVHAVNNNPTYPPFPEGMQVAIFGMGCFWGAEKMFWKLPGVFSTQVGFSGGFTANPTYQ
EVCSGMTGHAEVVRVVFDPQKISYEKLLRFFWENHDPTQGMKQYEDFGTQYRSAIYTIGA
EQLESALRSKAMYEQELAKKQLGPITTEIWEASEFYYAEDYHQQYLHKNPDGFCGLQGTG
VACPIG
//
>ULFR01000020.1:subseq(4187109,130178).[49635:80178].sp
GCAGCTGTCCATGCTGTCAACAACAATCCGACATATCCCCCATTTCCCGAAGGAATGCAA
GTGGCAATATTTGGCATGGGATGTTTCTGGGGAGCAGAAAAAATGTTTTGGAAACTGCCG
GGGGTCTTCTCCACACAGGTGGGATTCTCAGGAGGCTTCACTGCCAATCCTACCTACCAA
GAAGTCTGCAGCGGGATGACGGGACATGCGGAGGTGGTCCGTGTAGTGTTTGACCCACAG
AAGATCAGCTATGAAAAGCTCCTCCGATTTTTCTGGGAGAATCACGATCCAACCCAAGGA
ATGAAGCAGTATGAAGACTTTGGCACACAGTATCGCTCGGCCATCTACACAATCGGAGCA
GAACAACTGGAATCTGCTTTAAGATCCAAGGCAATGTATGAACAGGAGTTGGCTAAGAAG
CAACTGGGGCCAATAACGACGGAGATCTGGGAGGCTAGCGAATTCTACTACGCCGAAGAT
TACCACCAGCAATATCTGCACAAAAACCCGGATGGCTTTTGCGGCCTGCAAGGCACTGGC
GTGGCCTGCCCCATAGGC
//
ULFR01000020.1:subseq(4187109,130178)	GeneWise	match	49635	80178	266.41	+	.	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
ULFR01000020.1:subseq(4187109,130178)	GeneWise	cds	49635	49707	0.00	+	0	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
ULFR01000020.1:subseq(4187109,130178)	GeneWise	intron	49708	50000	0.00	+	.	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
ULFR01000020.1:subseq(4187109,130178)	GeneWise	cds	50001	50120	0.00	+	2	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
ULFR01000020.1:subseq(4187109,130178)	GeneWise	intron	50121	54217	0.00	+	.	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
ULFR01000020.1:subseq(4187109,130178)	GeneWise	cds	54218	54322	0.00	+	2	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
ULFR01000020.1:subseq(4187109,130178)	GeneWise	intron	54323	62173	0.00	+	.	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
ULFR01000020.1:subseq(4187109,130178)	GeneWise	cds	62174	62280	0.00	+	2	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
ULFR01000020.1:subseq(4187109,130178)	GeneWise	intron	62281	80025	0.00	+	.	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
ULFR01000020.1:subseq(4187109,130178)	GeneWise	cds	80026	80178	0.00	+	0	ULFR01000020.1:subseq(4187109,130178)-genewise-prediction-1
//
