TBLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 3,184 sequences; 1,209,001,349 total letters Query= NP_001338303.1 selenoprotein W [Gallus gallus] Length=85 Score E Sequences producing significant alignments: (Bits) Value PTFA01000548.1 Casuarius casuarius isolate B32419 scaffold_547, ... 72.8 4e-15 PTFA01000353.1 Casuarius casuarius isolate B32419 scaffold_352, ... 30.0 5.4 PTFA01000044.1 Casuarius casuarius isolate B32419 scaffold_43, w... 29.6 5.5 PTFA01000298.1 Casuarius casuarius isolate B32419 scaffold_297, ... 29.6 5.6 PTFA01000285.1 Casuarius casuarius isolate B32419 scaffold_284, ... 29.3 7.8 PTFA01001482.1 Casuarius casuarius isolate B32419 scaffold_1481,... 29.3 9.9 >PTFA01000548.1 Casuarius casuarius isolate B32419 scaffold_547, whole genome shotgun sequence Length=175818 Score = 72.8 bits (177), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 46/83 (55%), Gaps = 35/83 (42%) Frame = -2 Query 38 GQGTQEVTGWFEVTVGSRLVHSKK-----------------------------------N 62 G+GT+EVTGWFEVTVG LVHSKK N Sbjct 16232 GEGTREVTGWFEVTVGGTLVHSKKVSAAPGSRTPFLLLLLLALFPLFPVPPARPCPPRQN 16053 Query 63 GDGFVDTDAKLQRIVAAIQAALP 85 GDGFVDTDAKL+RIVAA++AALP Sbjct 16052 GDGFVDTDAKLRRIVAAVEAALP 15984 >PTFA01000353.1 Casuarius casuarius isolate B32419 scaffold_352, whole genome shotgun sequence Length=833297 Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust. Identities = 12/32 (38%), Positives = 18/32 (56%), Gaps = 0/32 (0%) Frame = +3 Query 16 KPKYERLRAELEKRFPGALEMRGQGTQEVTGW 47 +P LR++ R PGA + R + +VTGW Sbjct 440073 RPPRASLRSDGGARCPGAFKARARSPSDVTGW 440168 >PTFA01000044.1 Casuarius casuarius isolate B32419 scaffold_43, whole genome shotgun sequence Length=5744358 Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 0/46 (0%) Frame = +2 Query 40 GTQEVTGWFEVTVGSRLVHSKKNGDGFVDTDAKLQRIVAAIQAALP 85 GTQEV + G R +K G G + KLQ + + +P Sbjct 3809930 GTQEVASSLQSPRGGRTGKQRKGGGGLSSSHLKLQHLCGYLPPRVP 3810067 Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 34/70 (49%), Gaps = 1/70 (1%) Frame = -3 Query 17 PKYERLRAELEKRFPGALEMRGQGTQEVTGWFEVTVGSRLVHSKKNGDGFVDTDA-KLQR 75 P ++ ++ A + G +++ W++ + RL+H+K +G + A K Q+ Sbjct 3621721 PSTASFKSNFHRKCISATQKEGSKSKKTCSWWKTNILCRLIHAKGKRNGKENMPAQKKQK 3621542 Query 76 IVAAIQAALP 85 + ++A +P Sbjct 3621541 PPSGLEAQIP 3621512 >PTFA01000298.1 Casuarius casuarius isolate B32419 scaffold_297, whole genome shotgun sequence Length=1181553 Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 23/42 (55%), Gaps = 1/42 (2%) Frame = +2 Query 15 YKPKYERLRAELEKRFPGALEMRGQGTQEVTGWFEVTVGSRL 56 YKP+ +LR L R PGA+ Q + +TG FE G +L Sbjct 844511 YKPRTRQLRRGLAARLPGAIN-GAQNSSNLTGSFEKR*GEKL 844633 >PTFA01000285.1 Casuarius casuarius isolate B32419 scaffold_284, whole genome shotgun sequence Length=1237491 Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 0/33 (0%) Frame = -2 Query 16 KPKYERLRAELEKRFPGALEMRGQGTQEVTGWF 48 KP R L + PG + GQG QE GWF Sbjct 694160 KPSSGRAGCCLRGKHPGKTQGAGQGEQEPPGWF 694062 >PTFA01001482.1 Casuarius casuarius isolate B32419 scaffold_1481, whole genome shotgun sequence Length=7948 Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust. Identities = 17/38 (45%), Positives = 22/38 (58%), Gaps = 3/38 (8%) Frame = -1 Query 10 CGAXGYKPKYERLRAELEKRFPGALEMRGQGTQEVTGW 47 C G P+Y +RA R PGA ++RG GTQ +GW Sbjct 3100 CPGTGTGPRYPGIRAG--PRRPGAGQVRGPGTQG-SGW 2996 Lambda K H a alpha 0.320 0.137 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10070235225 Database: genome.fa Posted date: Oct 19, 2018 9:06 AM Number of letters in database: 1,209,001,349 Number of sequences in database: 3,184 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40