TBLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 3,184 sequences; 1,209,001,349 total letters Query= SPP00001052_2.0 # Protein # Selenoprotein O (SELENOO) # Chicken Length=629 Score E Sequences producing significant alignments: (Bits) Value PTFA01000225.1 Casuarius casuarius isolate B32419 scaffold_224, ... 185 1e-47 PTFA01000041.1 Casuarius casuarius isolate B32419 scaffold_40, w... 56.2 1e-12 PTFA01000011.1 Casuarius casuarius isolate B32419 scaffold_10, w... 39.3 0.33 >PTFA01000225.1 Casuarius casuarius isolate B32419 scaffold_224, whole genome shotgun sequence Length=1638707 Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 107/135 (79%), Positives = 116/135 (86%), Gaps = 3/135 (2%) Frame = +3 Query 6 RFDNLAMRSLPVDPFEDCAPRAVPGACFARVRPTPLRNPRLVAMSapalallgleaggpe 65 RFDNLA+R+LPVD ED APR VPGACF RVRP+P++NP+LVAMS PALALLGL A Sbjct 722028 RFDNLALRALPVDASEDSAPRPVPGACFCRVRPSPVQNPQLVAMSLPALALLGLGAAPSA 722207 Query 66 aereaeaa---lYFSGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVRGPRGAR 122 AEREA A YFSGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAA+YLGEV GPRG R Sbjct 722208 AEREAREAEAAQYFSGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLGPRGER 722387 Query 123 WELQLKGAGITPFSR 137 WE+QLKGAG+TPFSR Sbjct 722388 WEIQLKGAGLTPFSR 722432 Score = 150 bits (378), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 92/100 (92%), Positives = 98/100 (98%), Gaps = 0/100 (0%) Frame = +3 Query 304 FGFMDRYDPEHICNGSDNTGRYAYNRQPEICKWNLGKlaealvpelpleiselileeeYD 363 + F+ RYDPEHICNGSDNTGRYAYN+QPEICKWNLGKLAEALVPELPLEISELILEE+YD Sbjct 728466 YFFICRYDPEHICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPLEISELILEEDYD 728645 Query 364 AEFEKHYLQKMRKKLGLIQLELEEDSKLVSELLETMHLTG 403 AEFEKHYLQKMRKKLGLIQLE+EED+KLVSELLETMHLTG Sbjct 728646 AEFEKHYLQKMRKKLGLIQLEIEEDNKLVSELLETMHLTG 728765 Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 67/69 (97%), Positives = 68/69 (99%), Gaps = 0/69 (0%) Frame = +3 Query 137 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSEVVRDIFYDGNPKKERCTVV 196 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDS+VVRDIFYDGNPK ERCTVV Sbjct 723933 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSKVVRDIFYDGNPKNERCTVV 724112 Query 197 LRIASTFIR 205 LRIASTFIR Sbjct 724113 LRIASTFIR 724139 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 60/71 (85%), Positives = 65/71 (92%), Gaps = 0/71 (0%) Frame = +2 Query 205 RFGSFEIFKPPDEYTGRKGPSVNRNDIRIQMLDYVIGTFYPEIQEAHADNSIQRNAAFFK 264 RFGSFEIFKP DE+TGRKGPSVNRNDIRIQMLDYVIGTFYPEIQEA++DNSIQRNAAFFK Sbjct 725078 RFGSFEIFKPTDEHTGRKGPSVNRNDIRIQMLDYVIGTFYPEIQEAYSDNSIQRNAAFFK 725257 Query 265 EITKRTARLVA 275 E+ K + VA Sbjct 725258 EVGKTFHKFVA 725290 Score = 128 bits (321), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 64/72 (89%), Positives = 66/72 (92%), Gaps = 1/72 (1%) Frame = +2 Query 444 VAFKPQMDPRQLSMMLMLAQSNPQLFALIGTKANINKELERIEQFSKLQQLTAADLLSRN 503 V F P + RQLSMMLMLAQSNPQLFALIGTKANINKELERIEQFSKLQQLTAADLLSRN Sbjct 731498 VVFFP-LISRQLSMMLMLAQSNPQLFALIGTKANINKELERIEQFSKLQQLTAADLLSRN 731674 Query 504 KRHWTEWLEKYR 515 +RHW EWLEKYR Sbjct 731675 QRHWKEWLEKYR 731710 Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/63 (78%), Positives = 54/63 (86%), Gaps = 0/63 (0%) Frame = +2 Query 391 LVSELLETMHLTGGDFTNIFYLLSSFSVDTDPSRLEDFLEKLISQCASVEELRVAFKPQM 450 L+ LL+ +GGDFTNIFYLLSSF VD DPSRLEDFLEKL SQCAS+EEL+VAFKPQM Sbjct 729101 LLVPLLKEFTFSGGDFTNIFYLLSSFLVDFDPSRLEDFLEKLASQCASLEELKVAFKPQM 729280 Query 451 DPR 453 DPR Sbjct 729281 DPR 729289 Score = 99.8 bits (247), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 45/59 (76%), Positives = 54/59 (92%), Gaps = 0/59 (0%) Frame = +1 Query 510 WLEKYRVRLHKEVESISDVDAWNTERVKVMNSNNPRYILRNYIAQNAIEAAENGDFSEV 568 +L +R+RL KE+E+IS+ D WNT+RVKVMN+NNP+YILRNYIAQNAIEAAENGDFSEV Sbjct 732787 YLLIFRIRLQKEIENISNADVWNTDRVKVMNANNPKYILRNYIAQNAIEAAENGDFSEV 732963 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%) Frame = +2 Query 266 ITKRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDR 309 ITKRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDR Sbjct 727952 ITKRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDR 728083 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/66 (74%), Positives = 50/66 (76%), Gaps = 4/66 (6%) Frame = +1 Query 568 VRNVLKLLENPFQeted----stemetkeeeatataaacaqatRSRLSYCSKPPLWASEL 623 VRNVLKLLENPFQETE E E +EE TA AAACAQ TRS L YCSKPPLWASEL Sbjct 733684 VRNVLKLLENPFQETESFREVKEEAEAEEEGTTAAAAACAQVTRSGLPYCSKPPLWASEL 733863 Query 624 CVTXSS 629 CVT SS Sbjct 733864 CVT*SS 733881 >PTFA01000041.1 Casuarius casuarius isolate B32419 scaffold_40, whole genome shotgun sequence Length=6069262 Score = 56.2 bits (134), Expect(3) = 1e-12, Method: Compositional matrix adjust. Identities = 25/32 (78%), Positives = 28/32 (88%), Gaps = 0/32 (0%) Frame = -2 Query 137 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRA 168 R DGR VLRSS+REFLCSEAM +LGIPT+RA Sbjct 1883961 RNGDGRAVLRSSVREFLCSEAMHYLGIPTSRA 1883866 Score = 34.7 bits (78), Expect(3) = 1e-12, Method: Compositional matrix adjust. Identities = 14/18 (78%), Positives = 16/18 (89%), Gaps = 0/18 (0%) Frame = -3 Query 120 GARWELQLKGAGITPFSR 137 G RWELQLKG+G TP+SR Sbjct 1884110 GERWELQLKGSGKTPYSR 1884057 Score = 25.4 bits (54), Expect(3) = 1e-12, Method: Compositional matrix adjust. Identities = 13/22 (59%), Positives = 16/22 (73%), Gaps = 2/22 (9%) Frame = -2 Query 92 YCGHQFGSFAGQLGDGAAIYLG 113 +C QFG +AGQLGDG A +G Sbjct 1884291 FC--QFGIWAGQLGDGRAHLIG 1884232 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/29 (72%), Positives = 24/29 (83%), Gaps = 0/29 (0%) Frame = -1 Query 285 GVLNTDNMSIVGLTIDYGPFGFMDRYDPE 313 GV NTDN S++ +TIDYGPFGFMD YDP Sbjct 1875334 GVFNTDNFSLLSITIDYGPFGFMDSYDPS 1875248 Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/33 (55%), Positives = 24/33 (73%), Gaps = 0/33 (0%) Frame = -2 Query 543 NPRYILRNYIAQNAIEAAENGDFSEVRNVLKLL 575 NPRY+LRN+IA++A A DFSEV+ V+ L Sbjct 1862667 NPRYVLRNWIAESATRKANLNDFSEVKLVISFL 1862569 >PTFA01000011.1 Casuarius casuarius isolate B32419 scaffold_10, whole genome shotgun sequence Length=10042489 Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Frame = -1 Query 103 QLGDGAAIYLGEVRGPRGARWELQLKGAGITPFSRQADGRKVLRSS-------IREFLCS 155 LGDGA + + GPR A++ L+ +G G P S G + + R + + Sbjct 743941 SLGDGAFTSIRFLTGPR*AQYRLRYRGKGSVPLSHSRQGVSPWKVADVPKALVTRAIITA 743762 Query 156 EAMFHLGIPTTRAGTC 171 + + HLG P R G C Sbjct 743761 DGLAHLGTPRIRCGHC 743714 Lambda K H a alpha 0.321 0.136 0.417 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 200082340017 Database: genome.fa Posted date: Oct 19, 2018 9:06 AM Number of letters in database: 1,209,001,349 Number of sequences in database: 3,184 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40