TBLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 3,184 sequences; 1,209,001,349 total letters Query= SPP00001056_2.0 # Protein # Methionine-R-sufoxide reductase 1 (MSRB1) # Chicken Length=107 Score E Sequences producing significant alignments: (Bits) Value PTFA01000482.1 Casuarius casuarius isolate B32419 scaffold_481, ... 99.8 1e-38 >PTFA01000482.1 Casuarius casuarius isolate B32419 scaffold_481, whole genome shotgun sequence Length=298593 Score = 99.8 bits (247), Expect(2) = 1e-38, Method: Compositional matrix adjust. Identities = 45/57 (79%), Positives = 50/57 (88%), Gaps = 0/57 (0%) Frame = +2 Query 16 FEPGVYVCARCGYELFSSRAKYEHSSPWPAFTETIHEDSVAKRKERPGALKVSCGKC 72 PG+YVCA+CGYELFSSR KYEHSSPWPAFTETIH+DSV+K +ERPGALKV KC Sbjct 163169 LPPGIYVCAKCGYELFSSRTKYEHSSPWPAFTETIHQDSVSKYEERPGALKVRTLKC 163339 Score = 81.3 bits (199), Expect(2) = 1e-38, Method: Compositional matrix adjust. Identities = 40/41 (98%), Positives = 40/41 (98%), Gaps = 0/41 (0%) Frame = +3 Query 67 VSCGKCGNGLGHEFLNDGPKRGQSRFXIFSSSLKFIPKGEG 107 VSCGKCGNGLGHEFLNDGPKRGQSRF IFSSSLKFIPKGEG Sbjct 163437 VSCGKCGNGLGHEFLNDGPKRGQSRF*IFSSSLKFIPKGEG 163559 Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/27 (67%), Positives = 21/27 (78%), Gaps = 0/27 (0%) Frame = +2 Query 1 MSFCSFFGGEVFKDHFEPGVYVCARCG 27 MSFC+FFGGEVF++HFEPG A G Sbjct 162428 MSFCAFFGGEVFRNHFEPGERARAALG 162508 Lambda K H a alpha 0.321 0.140 0.453 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10068484025 Database: genome.fa Posted date: Oct 19, 2018 9:06 AM Number of letters in database: 1,209,001,349 Number of sequences in database: 3,184 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40