TBLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 3,184 sequences; 1,209,001,349 total letters Query= SPP00000020_1.0 # Protein # Selenoprotein P (SelP) # Homo sapiens # Complete Length=381 Score E Sequences producing significant alignments: (Bits) Value PTFA01000286.1 Casuarius casuarius isolate B32419 scaffold_285, ... 105 6e-23 PTFA01000109.1 Casuarius casuarius isolate B32419 scaffold_108, ... 69.7 4e-11 PTFA01000012.1 Casuarius casuarius isolate B32419 scaffold_11, w... 41.6 0.027 PTFA01000100.1 Casuarius casuarius isolate B32419 scaffold_99, w... 33.9 7.4 >PTFA01000286.1 Casuarius casuarius isolate B32419 scaffold_285, whole genome shotgun sequence Length=1229185 Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 0/73 (0%) Frame = +3 Query 68 KLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLL 127 +LEDLRVKL+ EG NISY+VVNHQG S K+ LK VS++I VYQQ+E Q DVWT L Sbjct 1001409 RLEDLRVKLENEGLVNISYVVVNHQGTQSHRKFHLLKESVSDYITVYQQDEKQADVWTTL 1001588 Query 128 NGSKDDFLIYDRC 140 NG+KDDFLIYDR Sbjct 1001589 NGNKDDFLIYDRS 1001627 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 33/43 (77%), Positives = 36/43 (84%), Gaps = 0/43 (0%) Frame = +3 Query 138 DRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL 180 RCGRLVYHLGLP+SFL+F YVEE+IKIAYCE KCGNCS Sbjct 1003323 HRCGRLVYHLGLPYSFLSFQYVEESIKIAYCENKCGNCSYMVF 1003451 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/68 (65%), Positives = 52/68 (76%), Gaps = 4/68 (6%) Frame = +3 Query 1 MWRSlglalalcllPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUY 60 MW LGL L+LCLL GG E Q+ CK+PP W I +++PMLNS GSVTVVALLQAS Y Sbjct 999390 MWAGLGLVLSLCLLSGGGAEIQN----CKEPPEWHIGEENPMLNSRGSVTVVALLQAS*Y 999557 Query 61 LCILQASK 68 LC+LQAS+ Sbjct 999558 LCLLQASR 999581 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/67 (48%), Positives = 41/67 (61%), Gaps = 0/67 (0%) Frame = +2 Query 281 CINQLLCKLPTDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLRAEENIT 340 C NQL S+ S CCHCRHL+FE+ G+++T QC+ LP+ CS G E+IT Sbjct 1005185 CKNQLT*NWQKASDSTSSS*CCHCRHLLFEELGNSVT*QCRGALPNSCS*HGQLLAEDIT 1005364 Query 341 ESCQURL 347 ES Q RL Sbjct 1005365 ES*Q*RL 1005385 >PTFA01000109.1 Casuarius casuarius isolate B32419 scaffold_108, whole genome shotgun sequence Length=3455516 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/71 (44%), Positives = 43/71 (61%), Gaps = 0/71 (0%) Frame = -3 Query 69 LEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLN 128 L LR KL ++G +++ Y++VN + SR + L + + VYQQE DVW LL Sbjct 303876 LGGLRDKLSRQGMADVRYMIVNEKAPLSRALFGELARQAPPGVAVYQQEPQDPDVWQLLE 303697 Query 129 GSKDDFLIYDR 139 G KDDFL+YDR Sbjct 303696 GDKDDFLVYDR 303664 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 23/38 (61%), Positives = 28/38 (74%), Gaps = 0/38 (0%) Frame = -3 Query 140 CGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSL 177 C RL +H+ LP+SFL FPYVE AI+ Y + CGNCSL Sbjct 302748 CARLAFHIQLPYSFLHFPYVESAIRFTYSKDFCGNCSL 302635 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/48 (42%), Positives = 30/48 (63%), Gaps = 0/48 (0%) Frame = -1 Query 21 SQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUYLCILQASK 68 + + S LC+ P W++ PM + G VTVVALL+AS + C+ QA + Sbjct 304157 TANSSRLCQVAPVWTVNGSSPMAGAVGQVTVVALLKAS*HFCLRQAHR 304014 >PTFA01000012.1 Casuarius casuarius isolate B32419 scaffold_11, whole genome shotgun sequence Length=9512740 Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 38/58 (66%), Gaps = 6/58 (10%) Frame = +3 Query 306 HLIFEKT-GSAITUQCKENLPSLCSUQGLRA--EENITESCQURLPPAAUQISQQLIP 360 HL+++ T +A+T + + N PSLCS +GL+A E ++T S Q RLP +SQ L+P Sbjct 3748383 HLLYDSTVATALTQK*ETNFPSLCSERGLKAAQERDLTISYQARLP---LVLSQLLVP 3748547 >PTFA01000100.1 Casuarius casuarius isolate B32419 scaffold_99, whole genome shotgun sequence Length=3551426 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 20/67 (30%), Positives = 33/67 (49%), Gaps = 4/67 (6%) Frame = +1 Query 307 LIFEKTGSAITUQCKENLPSLCSUQGLRAEENITESCQURLPPAAUQISQ----QLIPTE 362 LIF T ++I + LP L +G + EE + CQ LPP+A Q + + + + Sbjct 648079 LIFRTTMASIVWCSRNLLPGLRGVRGEQPEEGNHQPCQRVLPPSATQTRKAEDNRWVRAD 648258 Query 363 ASASURU 369 A++R Sbjct 648259 QGANCRA 648279 Lambda K H a alpha 0.318 0.131 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 102259404574 Database: genome.fa Posted date: Oct 19, 2018 9:06 AM Number of letters in database: 1,209,001,349 Number of sequences in database: 3,184 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40