TBLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 3,184 sequences; 1,209,001,349 total letters Query= SPP00000036_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Homo sapiens # Complete Length=754 Score E Sequences producing significant alignments: (Bits) Value PTFA01000138.1 Casuarius casuarius isolate B32419 scaffold_137, ... 145 7e-34 PTFA01000005.1 Casuarius casuarius isolate B32419 scaffold_4, wh... 125 1e-27 PTFA01000112.1 Casuarius casuarius isolate B32419 scaffold_111, ... 85.1 4e-15 PTFA01000511.1 Casuarius casuarius isolate B32419 scaffold_510, ... 50.1 2e-04 PTFA01000313.1 Casuarius casuarius isolate B32419 scaffold_312, ... 43.5 0.021 PTFA01000127.1 Casuarius casuarius isolate B32419 scaffold_126, ... 40.0 0.21 >PTFA01000138.1 Casuarius casuarius isolate B32419 scaffold_137, whole genome shotgun sequence Length=2905401 Score = 145 bits (366), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 67/76 (88%), Positives = 73/76 (96%), Gaps = 0/76 (0%) Frame = -3 Query 433 ITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVG 492 + SDDLFSLPYCPGKTLVVGASYVALECAGFLAG GLDVTVMVRSILLRGFDQEMAE+VG Sbjct 1443892 LFSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAERVG 1443713 Query 493 SYMEQHGVKFLRKFIP 508 ++ME HGVKF+RKF+P Sbjct 1443712 AHMETHGVKFIRKFVP 1443665 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 40/46 (87%), Positives = 45/46 (98%), Gaps = 0/46 (0%) Frame = -2 Query 688 DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 733 +RVIGFH+LGPNAGEVTQGFAAA+KCGLTK+LLD+TIGIHPTC EV Sbjct 1438694 NRVIGFHVLGPNAGEVTQGFAAAIKCGLTKELLDETIGIHPTCAEV 1438557 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 37/49 (76%), Positives = 43/49 (88%), Gaps = 0/49 (0%) Frame = -1 Query 349 VRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKA 397 V+HNWE M +AIQN+I SLNWGYR+SLREK+V Y+NSYGEFVE HKIK Sbjct 1445661 VKHNWEIMVEAIQNYIGSLNWGYRVSLREKSVTYINSYGEFVEPHKIKV 1445515 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 39/54 (72%), Positives = 47/54 (87%), Gaps = 0/54 (0%) Frame = -3 Query 567 KSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKC 620 ++GK+PVND EQTNVPYVYA+GDIL+ K ELTPVAIQ+GKLLA+RL+G S K Sbjct 1441735 RNGKVPVNDEEQTNVPYVYAIGDILDGKLELTPVAIQAGKLLARRLYGGSSTKV 1441574 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 35/40 (88%), Positives = 38/40 (95%), Gaps = 0/40 (0%) Frame = -1 Query 309 GLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ 348 GLGGTCVNVGCIPKKLMHQAALLGQAL DSRK+GW+Y +Q Sbjct 1446180 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKYGWQYEEQ 1446061 Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/61 (61%), Positives = 42/61 (69%), Gaps = 4/61 (7%) Frame = -1 Query 396 KATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDD----LFSLPYCPGKTLVV 451 +ATN+KGQ TY+TA FV+ATGERPRYLGI GD+EYCIT D L C GK V Sbjct 1444101 QATNRKGQVTYHTAETFVLATGERPRYLGIPGDREYCITR*DEKAFFVYLSVCKGKQTCV 1443922 Query 452 G 452 G Sbjct 1443921 G 1443919 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/37 (78%), Positives = 34/37 (92%), Gaps = 0/37 (0%) Frame = -1 Query 620 CDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEI 656 CDYINVPTTVFTPLEYG CGL+EE+A+E Y K+NLE+ Sbjct 1441362 CDYINVPTTVFTPLEYGSCGLAEERAMEEYGKQNLEV 1441252 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 25/33 (76%), Positives = 31/33 (94%), Gaps = 0/33 (0%) Frame = -2 Query 655 EIYHTLFWPLEWTVAGRENNTCYAKIICNKFDH 687 ++YH+LFWPLEWT+ GR+NNTCYAKIICNK D+ Sbjct 1440347 QVYHSLFWPLEWTIPGRDNNTCYAKIICNKHDN 1440249 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/81 (46%), Positives = 49/81 (60%), Gaps = 8/81 (10%) Frame = -1 Query 170 LVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQK 229 LVGL + V +++ S C + K + NV L +DDG +Q+VL E+TNQ+ Sbjct 1451235 LVGL-QYVTVWVYNTSACLKRSL*KLFY-------NVSVLIFLDDGPSIQQVLVELTNQR 1451080 Query 230 TVPNIFVNKVHVGGCDQTFQA 250 TVPN+FVN HVGGCD TFQ Sbjct 1451079 TVPNVFVNGRHVGGCDSTFQV 1451017 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/28 (75%), Positives = 26/28 (93%), Gaps = 0/28 (0%) Frame = -2 Query 282 CAKEAAILGKKVMVLDFVVPSPQGTSWG 309 ++EAA+LGKKVMVLD+VVP+P GTSWG Sbjct 1447166 LSQEAAVLGKKVMVLDYVVPTPLGTSWG 1447083 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/26 (85%), Positives = 24/26 (92%), Gaps = 0/26 (0%) Frame = -2 Query 542 VLLAIGRDSCTRKIGLEKIGVKINEK 567 VL+AIGRD+CTR IGLE IGVKINEK Sbjct 1442879 VLIAIGRDACTRNIGLETIGVKINEK 1442802 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/44 (55%), Positives = 32/44 (73%), Gaps = 1/44 (2%) Frame = -1 Query 509 VMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCT 552 + V++LE+G PG+LKV AKSTEG E EG YNTV ++ D C+ Sbjct 1443387 IQVEKLEEGMPGRLKVTAKSTEGPEVFEGEYNTVSIS-ALDICS 1443259 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/23 (70%), Positives = 21/23 (91%), Gaps = 0/23 (0%) Frame = -3 Query 732 EVFTTLEITKSSGLDITQKGCUG 754 +VFTT++ITKSSG DI+Q+GC G Sbjct 1438270 QVFTTMDITKSSGQDISQRGC*G 1438202 >PTFA01000005.1 Casuarius casuarius isolate B32419 scaffold_4, whole genome shotgun sequence Length=12021036 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 55/70 (79%), Positives = 65/70 (93%), Gaps = 0/70 (0%) Frame = +2 Query 442 PYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVK 501 PYCPGKTLVVGASYVALECAGFLAG GLDVTVMVRSILLRGFDQ++A K+G YME+HG+ Sbjct 8391074 PYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDIANKIGEYMEEHGIN 8391253 Query 502 FLRKFIPVMV 511 F+++F+P+ V Sbjct 8391254 FIKQFVPIKV 8391283 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 59/129 (46%), Positives = 73/129 (57%), Gaps = 43/129 (33%) Frame = +1 Query 349 VRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIK------------ 396 V+HNW TMT+++QN+I SLNWGYR++LREK V Y N+YGEFV H +K Sbjct 8388805 VKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYGEFVGPHTVKVLPSHV*WVFL* 8388984 Query 397 -------------------------------ATNKKGQETYYTAAQFVIATGERPRYLGI 425 ATNK+G E YTA +F+IATGERPRYLGI Sbjct 8388985 CFINKDAFQMEYSFPC*DWKVLTSDSFFVQQATNKRGIEKLYTAERFLIATGERPRYLGI 8389164 Query 426 QGDKEYCIT 434 GD+EYCI+ Sbjct 8389165 PGDEEYCIS 8389191 Score = 77.4 bits (189), Expect(2) = 3e-19, Method: Compositional matrix adjust. Identities = 34/40 (85%), Positives = 38/40 (95%), Gaps = 0/40 (0%) Frame = +1 Query 309 GLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ 348 GLGGTCVNVGCIPKKLMHQAALLGQAL DSRKFGW++ ++ Sbjct 8387803 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFTEE 8387922 Score = 42.4 bits (98), Expect(2) = 3e-19, Method: Compositional matrix adjust. Identities = 19/26 (73%), Positives = 21/26 (81%), Gaps = 0/26 (0%) Frame = +3 Query 284 KEAAILGKKVMVLDFVVPSPQGTSWG 309 +EAA KKVMVLDFV P+P GTSWG Sbjct 8387610 QEAAKYDKKVMVLDFVTPTPLGTSWG 8387687 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 41/59 (69%), Positives = 49/59 (83%), Gaps = 0/59 (0%) Frame = +1 Query 562 VKINEKSGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEKC 620 V N ++GKIPVND EQTNVPY+YAVGDIL+DK ELTPVAIQ+G+LL QRL+G + K Sbjct 8397568 VNANCRTGKIPVNDEEQTNVPYIYAVGDILQDKLELTPVAIQAGRLLVQRLYGGATIKV 8397744 Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 37/46 (80%), Positives = 42/46 (91%), Gaps = 0/46 (0%) Frame = +1 Query 688 DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEV 733 +RVIGFH+LGPNAGEVTQGFAAA+KCG+TK+ LD TIGIHP C EV Sbjct 8405380 ERVIGFHVLGPNAGEVTQGFAAAIKCGMTKEQLDSTIGIHPVCAEV 8405517 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (63%), Gaps = 9/72 (13%) Frame = +3 Query 593 DKPELTPVAIQSGKLLAQR--------LFGASLEKCDYINVPTTVFTPLEYGCCGLSEEK 644 + P PV Q+ ++L+ F + +CDY+NVPTTVFTPLEYG CG SEE Sbjct 8400813 NNPAFLPV-FQTAEILSAC*YITDIVCFFVLNTTQCDYVNVPTTVFTPLEYGACGYSEES 8400989 Query 645 AIEVYKKENLEI 656 A+E + +EN+E+ Sbjct 8400990 AVEKFGEENIEV 8401025 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 3/57 (5%) Frame = +3 Query 637 CCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCYAKIICNKFDHDRVIGF 693 CC ++ V ++YH+ FWPLEWTV R+NN CYAKIICN D+ V+ F Sbjct 8403015 CCEITNLSLTSVLY---FQVYHSYFWPLEWTVPSRDNNKCYAKIICNIQDNVSVVFF 8403176 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/33 (76%), Positives = 30/33 (91%), Gaps = 0/33 (0%) Frame = +1 Query 542 VLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVN 574 VLLAIGRD+CTRKIGL+K+GVKINEK G++ V Sbjct 8395825 VLLAIGRDACTRKIGLDKVGVKINEK*GQMSVQ 8395923 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 27/32 (84%), Gaps = 0/32 (0%) Frame = +2 Query 511 VQQLEKGSPGKLKVLAKSTEGTETIEGVYNTV 542 ++Q+E+G+PG+LKV A+ST G + IEG YNTV Sbjct 8394011 IEQIEEGTPGRLKVTAQSTVGNQIIEGEYNTV 8394106 >PTFA01000112.1 Casuarius casuarius isolate B32419 scaffold_111, whole genome shotgun sequence Length=3387038 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 37/51 (73%), Positives = 42/51 (82%), Gaps = 0/51 (0%) Frame = -1 Query 303 PQGTSWGLGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQVRHNW 353 P GT WGLGGTCVNVGCIPKKLMHQAALLG AL D+ ++GW +Q V+H W Sbjct 1364024 PLGTKWGLGGTCVNVGCIPKKLMHQAALLGSALKDAERYGWNISQPVQHTW 1363872 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/58 (52%), Positives = 37/58 (64%), Gaps = 1/58 (2%) Frame = -1 Query 624 NVPTTVFTPLEYGCCGLSEEKAIEVYKKENLEIYHTLFWPLEWTVAGRENNTCY-AKI 680 VPTTVFTPLEYGC GLSEE+A++ Y +N+E+ L E E + CY AKI Sbjct 1337330 QVPTTVFTPLEYGCVGLSEEEAVQCYGSDNIEVCLIL*LMSELCYEKLEVSLCYQAKI 1337157 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/38 (68%), Positives = 29/38 (76%), Gaps = 0/38 (0%) Frame = -2 Query 456 VALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGS 493 V+LECAGFL G GLD TVM+RSI LRGFDQ + V S Sbjct 1354117 VSLECAGFLTGIGLDTTVMIRSIPLRGFDQVSTKHVAS 1354004 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/46 (54%), Positives = 33/46 (72%), Gaps = 0/46 (0%) Frame = -1 Query 547 GRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVPYVYAVGDILE 592 GR TR + LE +GVK N ++GKI V+ E T+VP++YAVGDI E Sbjct 1343006 GRVPDTRTLNLETVGVKTNSETGKIIVDASEATSVPHIYAVGDITE 1342869 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 27/43 (63%), Gaps = 0/43 (0%) Frame = -3 Query 712 KCGLTKQLLDDTIGIHPTCGEVFTTLEITKSSGLDITQKGCUG 754 +CG T L TIGIHPTC E T L ITK SGLD T GC G Sbjct 1331607 RCGATYPQLMKTIGIHPTCAEEITKLHITKRSGLDATVTGC*G 1331479 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/32 (66%), Positives = 25/32 (78%), Gaps = 0/32 (0%) Frame = -3 Query 594 KPELTPVAIQSGKLLAQRLFGASLEKCDYINV 625 +PELTP AI +GKLLA+RLFG S E DY +V Sbjct 1337643 RPELTPTAIAAGKLLARRLFGQSSELMDYDSV 1337548 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 17/37 (46%), Positives = 26/37 (70%), Gaps = 1/37 (3%) Frame = -1 Query 676 CYAKIICNKFDHDRVIGFHILGPNAGEVTQGFAAAMK 712 C+ +++C + R++G H +GPNAGEV QGFA +K Sbjct 1333961 CF-QMVCLREREQRILGLHFIGPNAGEVIQGFALGIK 1333854 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 13/24 (54%), Positives = 20/24 (83%), Gaps = 0/24 (0%) Frame = -3 Query 355 TMTKAIQNHISSLNWGYRLSLREK 378 M KA+QN++ SLNWG+R+ L++K Sbjct 1363548 VMAKAVQNYVKSLNWGHRVQLQDK 1363477 >PTFA01000511.1 Casuarius casuarius isolate B32419 scaffold_510, whole genome shotgun sequence Length=233620 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 0/50 (0%) Frame = -1 Query 688 DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGEVFTTL 737 +V+G H+ G E+ QGFA A+K G TK D T+ IHPT E TL Sbjct 1738 SKVVGLHMQGLGCDEMLQGFAVAIKMGATKANFDSTVAIHPTSAEELVTL 1589 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 23/48 (48%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = -2 Query 596 ELTPVAIQSGKLLAQRLF-GASLEKCDYINVPTTVFTPLEYGCCGLSE 642 L VAI +G+ LA RLF G K DY N+PT VF+ G GL+E Sbjct 3681 SLFTVAIAAGRKLAHRLFEGMQDSKLDYTNIPTVVFSHPPIGTVGLTE 3538 >PTFA01000313.1 Casuarius casuarius isolate B32419 scaffold_312, whole genome shotgun sequence Length=1059436 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/60 (37%), Positives = 36/60 (60%), Gaps = 0/60 (0%) Frame = -3 Query 173 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 232 +I + VVIFSK+ C + K+LF + V +ELD +G++ Q+VL ++T +TV Sbjct 307064 IISDNCVVIFSKTTCFYCKMAKKLFEGMNVNYTAVELDVNKNGSQFQDVLEQMTGGRTVS 306885 >PTFA01000127.1 Casuarius casuarius isolate B32419 scaffold_126, whole genome shotgun sequence Length=3114414 Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Frame = +2 Query 540 NTVLLAIGRDSCTRKIGLEKIGVKINEKSGKIPVNDVEQTNVP 582 + +L+ IGR T+ +GLE IG+++ +K G+IPVN+ QT +P Sbjct 483188 DVLLVCIGRRPFTKNLGLEDIGIEL-DKKGRIPVNNRFQTKIP 483313 Lambda K H a alpha 0.319 0.137 0.415 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 249595751660 Database: genome.fa Posted date: Oct 19, 2018 9:06 AM Number of letters in database: 1,209,001,349 Number of sequences in database: 3,184 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40