TBLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 3,184 sequences; 1,209,001,349 total letters Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete Length=499 Score E Sequences producing significant alignments: (Bits) Value PTFA01000138.1 Casuarius casuarius isolate B32419 scaffold_137, ... 144 9e-35 PTFA01000005.1 Casuarius casuarius isolate B32419 scaffold_4, wh... 139 3e-33 PTFA01000112.1 Casuarius casuarius isolate B32419 scaffold_111, ... 94.0 3e-18 PTFA01000511.1 Casuarius casuarius isolate B32419 scaffold_510, ... 52.8 2e-05 PTFA01000127.1 Casuarius casuarius isolate B32419 scaffold_126, ... 38.1 0.54 >PTFA01000138.1 Casuarius casuarius isolate B32419 scaffold_137, whole genome shotgun sequence Length=2905401 Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 65/82 (79%), Positives = 74/82 (90%), Gaps = 0/82 (0%) Frame = -3 Query 178 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG 237 + SDDLFSLPYCPGKTLVVGASYVALECAGFLAG+GLDVTVMVRSILLRGFDQ+MA ++G Sbjct 1443892 LFSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMAERVG 1443713 Query 238 EHMEEHGIKFIRQFVPIKVEQI 259 HME HG+KFIR+FVP + + Sbjct 1443712 AHMETHGVKFIRKFVPSQASTL 1443647 Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 40/54 (74%), Positives = 48/54 (89%), Gaps = 0/54 (0%) Frame = -3 Query 312 KTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKC 365 + GK+PV DEEQTNVPY+YAIGDIL+ K+ELTPVAIQAG+LLA+RLY GS+ K Sbjct 1441735 RNGKVPVNDEEQTNVPYVYAIGDILDGKLELTPVAIQAGKLLARRLYGGSSTKV 1441574 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 39/45 (87%), Positives = 42/45 (93%), Gaps = 0/45 (0%) Frame = -2 Query 434 RVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 478 RV+GFHVLGPNAGEVTQGFAAA+KCGLTK+ LD TIGIHP CAEV Sbjct 1438691 RVIGFHVLGPNAGEVTQGFAAAIKCGLTKELLDETIGIHPTCAEV 1438557 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 33/50 (66%), Positives = 44/50 (88%), Gaps = 0/50 (0%) Frame = -1 Query 93 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKA 142 +VKH+W+ M+EA+QN+IGSLNWGYRV+LREK V Y N+YG+F+ PH+IK Sbjct 1445664 SVKHNWEIMVEAIQNYIGSLNWGYRVSLREKSVTYINSYGEFVEPHKIKV 1445515 Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 36/39 (92%), Positives = 37/39 (95%), Gaps = 0/39 (0%) Frame = -1 Query 54 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE 92 GLGGTCVNVGCIPKKLMHQAALLGQALQDSR YGW+ EE Sbjct 1446180 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKYGWQYEE 1446064 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 42/63 (67%), Gaps = 4/63 (6%) Frame = -1 Query 141 KATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDD----LFSLPYCPGKTLVV 196 +ATN KG+ ++AE F++ATGERPRYLGIPGD+EYCI+ D L C GK V Sbjct 1444101 QATNRKGQVTYHTAETFVLATGERPRYLGIPGDREYCITR*DEKAFFVYLSVCKGKQTCV 1443922 Query 197 GAS 199 G + Sbjct 1443921 GRA 1443913 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/48 (60%), Positives = 32/48 (67%), Gaps = 0/48 (0%) Frame = -2 Query 385 LSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDN 432 LS + + +VYHS FWPLEWTIP RDNN CYAKIICN DN Sbjct 1440392 LSTLSNLNALSLSSSQVYHSLFWPLEWTIPGRDNNTCYAKIICNKHDN 1440249 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 27/37 (73%), Positives = 36/37 (97%), Gaps = 0/37 (0%) Frame = -1 Query 365 CDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 401 CDY NVPTTVFTPLEYG+CGL+EE+A+E++G++N+EV Sbjct 1441362 CDYINVPTTVFTPLEYGSCGLAEERAMEEYGKQNLEV 1441252 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 42/74 (57%), Gaps = 0/74 (0%) Frame = -1 Query 252 VPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINE 311 V I+VE++E G PGRL+V A+ST E+ EGEYNTV ++ T K+ T+ + Sbjct 1443393 VFIQVEKLEEGMPGRLKVTAKSTEGPEVFEGEYNTVSISALDICSTMKMC*NTLRAVQEK 1443214 Query 312 KTGKIPVTDEEQTN 325 G+ + D TN Sbjct 1443213 CKGRPCLADYSHTN 1443172 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/26 (85%), Positives = 25/26 (96%), Gaps = 0/26 (0%) Frame = -2 Query 287 VMLAIGRDACTRKIGLETVGVKINEK 312 V++AIGRDACTR IGLET+GVKINEK Sbjct 1442879 VLIAIGRDACTRNIGLETIGVKINEK 1442802 Score = 35.4 bits (80), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/17 (82%), Positives = 15/17 (88%), Gaps = 0/17 (0%) Frame = -2 Query 38 VMVLDFVTPTPLGTRWG 54 VMVLD+V PTPLGT WG Sbjct 1447133 VMVLDYVVPTPLGTSWG 1447083 >PTFA01000005.1 Casuarius casuarius isolate B32419 scaffold_4, whole genome shotgun sequence Length=12021036 Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 65/70 (93%), Positives = 69/70 (99%), Gaps = 0/70 (0%) Frame = +2 Query 187 PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIK 246 PYCPGKTLVVGASYVALECAGFLAG+GLDVTVMVRSILLRGFDQD+ANKIGE+MEEHGI Sbjct 8391074 PYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDIANKIGEYMEEHGIN 8391253 Query 247 FIRQFVPIKV 256 FI+QFVPIKV Sbjct 8391254 FIKQFVPIKV 8391283 Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 70/130 (54%), Positives = 80/130 (62%), Gaps = 43/130 (33%) Frame = +1 Query 93 TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK----------- 141 TVKH+W M E+VQN+IGSLNWGYRVALREKKV YENAYG+F+GPH +K Sbjct 8388802 TVKHNWMTMTESVQNYIGSLNWGYRVALREKKVTYENAYGEFVGPHTVKVLPSHV*WVFL 8388981 Query 142 --------------------------------ATNNKGKEKIYSAERFLIATGERPRYLG 169 ATN +G EK+Y+AERFLIATGERPRYLG Sbjct 8388982 *CFINKDAFQMEYSFPC*DWKVLTSDSFFVQQATNKRGIEKLYTAERFLIATGERPRYLG 8389161 Query 170 IPGDKEYCIS 179 IPGD+EYCIS Sbjct 8389162 IPGDEEYCIS 8389191 Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 46/60 (77%), Positives = 52/60 (87%), Gaps = 0/60 (0%) Frame = +1 Query 307 VKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCD 366 V N +TGKIPV DEEQTNVPYIYA+GDIL+DK+ELTPVAIQAGRLL QRLY G+T+K Sbjct 8397568 VNANCRTGKIPVNDEEQTNVPYIYAVGDILQDKLELTPVAIQAGRLLVQRLYGGATIKVS 8397747 Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 42/46 (91%), Positives = 46/46 (100%), Gaps = 0/46 (0%) Frame = +1 Query 433 ERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 478 ERV+GFHVLGPNAGEVTQGFAAA+KCG+TK+QLDSTIGIHPVCAEV Sbjct 8405380 ERVIGFHVLGPNAGEVTQGFAAAIKCGMTKEQLDSTIGIHPVCAEV 8405517 Score = 76.6 bits (187), Expect(2) = 8e-18, Method: Compositional matrix adjust. Identities = 34/39 (87%), Positives = 36/39 (92%), Gaps = 0/39 (0%) Frame = +1 Query 54 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE 92 GLGGTCVNVGCIPKKLMHQAALLGQALQDSR +GW+ E Sbjct 8387803 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFTE 8387919 Score = 37.4 bits (85), Expect(2) = 8e-18, Method: Compositional matrix adjust. Identities = 16/17 (94%), Positives = 16/17 (94%), Gaps = 0/17 (0%) Frame = +3 Query 38 VMVLDFVTPTPLGTRWG 54 VMVLDFVTPTPLGT WG Sbjct 8387637 VMVLDFVTPTPLGTSWG 8387687 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 32/40 (80%), Positives = 35/40 (88%), Gaps = 0/40 (0%) Frame = +3 Query 399 IEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGF 438 +VYHSYFWPLEWT+PSRDNNKCYAKIICN +DN VV F Sbjct 8403057 FQVYHSYFWPLEWTVPSRDNNKCYAKIICNIQDNVSVVFF 8403176 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/45 (78%), Positives = 38/45 (84%), Gaps = 0/45 (0%) Frame = +3 Query 357 LYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 401 + +T +CDY NVPTTVFTPLEYGACG SEE AVEKFGEENIEV Sbjct 8400891 FFVLNTTQCDYVNVPTTVFTPLEYGACGYSEESAVEKFGEENIEV 8401025 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/32 (78%), Positives = 29/32 (91%), Gaps = 0/32 (0%) Frame = +1 Query 287 VMLAIGRDACTRKIGLETVGVKINEKTGKIPV 318 V+LAIGRDACTRKIGL+ VGVKINEK G++ V Sbjct 8395825 VLLAIGRDACTRKIGLDKVGVKINEK*GQMSV 8395920 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/37 (68%), Positives = 29/37 (78%), Gaps = 0/37 (0%) Frame = +2 Query 251 FVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTV 287 F + +EQIE GTPGRL+V AQST +IIEGEYNTV Sbjct 8393996 FQTL*IEQIEEGTPGRLKVTAQSTVGNQIIEGEYNTV 8394106 Score = 37.4 bits (85), Expect = 0.83, Method: Compositional matrix adjust. Identities = 17/23 (74%), Positives = 20/23 (87%), Gaps = 0/23 (0%) Frame = +2 Query 477 EVFTTLSVTKRSGASILQAGCUG 499 ++FTTLSVTKRSG + LQAGC G Sbjct 8408786 KIFTTLSVTKRSGGNTLQAGC*G 8408854 >PTFA01000112.1 Casuarius casuarius isolate B32419 scaffold_111, whole genome shotgun sequence Length=3387038 Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 39/56 (70%), Positives = 47/56 (84%), Gaps = 0/56 (0%) Frame = -1 Query 48 PLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE 103 PLGT+WGLGGTCVNVGCIPKKLMHQAALLG AL+D+ YGW + + V+H W R++ Sbjct 1364024 PLGTKWGLGGTCVNVGCIPKKLMHQAALLGSALKDAERYGWNISQPVQHTW*RILS 1363857 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 44/67 (66%), Gaps = 3/67 (4%) Frame = -1 Query 335 ILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKF 394 IL V+++PV+ + Q+ Y + ++ VPTTVFTPLEYG GLSEE+AV+ + Sbjct 1337423 ILLTHVKVSPVSAMQQLHMVQQ*YF---LLFPHKQVPTTVFTPLEYGCVGLSEEEAVQCY 1337253 Query 395 GEENIEV 401 G +NIEV Sbjct 1337252 GSDNIEV 1337232 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/46 (61%), Positives = 33/46 (72%), Gaps = 0/46 (0%) Frame = -1 Query 292 GRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILE 337 GR TR + LETVGVK N +TGKI V E T+VP+IYA+GDI E Sbjct 1343006 GRVPDTRTLNLETVGVKTNSETGKIIVDASEATSVPHIYAVGDITE 1342869 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/30 (83%), Positives = 27/30 (90%), Gaps = 0/30 (0%) Frame = -2 Query 201 VALECAGFLAGIGLDVTVMVRSILLRGFDQ 230 V+LECAGFL GIGLD TVM+RSI LRGFDQ Sbjct 1354117 VSLECAGFLTGIGLDTTVMIRSIPLRGFDQ 1354028 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 42/64 (66%), Gaps = 3/64 (5%) Frame = -2 Query 230 QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVML 289 Q M++ + EHME +G KF+++ +P KVE++E+ +L+V ++T+ ++TVM Sbjct 1351378 QQMSSLVTEHMESYGTKFLKKCIPTKVEKLES---NKLQVTWKNTDLGTEETDSFDTVMW 1351208 Query 290 AIGR 293 A+G+ Sbjct 1351207 AVGK 1351196 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/43 (56%), Positives = 26/43 (60%), Gaps = 0/43 (0%) Frame = -3 Query 457 KCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGCUG 499 +CG T QL TIGIHP CAE T L +TKRSG GC G Sbjct 1331607 RCGATYPQLMKTIGIHPTCAEEITKLHITKRSGLDATVTGC*G 1331479 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 17/37 (46%), Positives = 27/37 (73%), Gaps = 1/37 (3%) Frame = -1 Query 421 CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 457 C+ +++C + +R++G H +GPNAGEV QGFA +K Sbjct 1333961 CF-QMVCLREREQRILGLHFIGPNAGEVIQGFALGIK 1333854 Score = 37.7 bits (86), Expect = 0.71, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 20/26 (77%), Gaps = 0/26 (0%) Frame = -1 Query 400 EVYHSYFWPLEWTIPSRDNNKCYAKI 425 +VYH+Y+ PLE+T+ RD +CY K+ Sbjct 1335878 QVYHAYYKPLEFTVAERDATQCYMKV 1335801 Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 25/34 (74%), Gaps = 0/34 (0%) Frame = -3 Query 337 EDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENV 370 + + ELTP AI AG+LLA+RL+ S+ DY++V Sbjct 1337649 QGRPELTPTAIAAGKLLARRLFGQSSELMDYDSV 1337548 Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust. Identities = 14/23 (61%), Positives = 20/23 (87%), Gaps = 0/23 (0%) Frame = -3 Query 101 MIEAVQNHIGSLNWGYRVALREK 123 M +AVQN++ SLNWG+RV L++K Sbjct 1363545 MAKAVQNYVKSLNWGHRVQLQDK 1363477 >PTFA01000511.1 Casuarius casuarius isolate B32419 scaffold_510, whole genome shotgun sequence Length=233620 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 31/51 (61%), Gaps = 0/51 (0%) Frame = -1 Query 432 NERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482 + +VVG H+ G E+ QGFA A+K G TK DST+ IHP AE TL Sbjct 1741 SSKVVGLHMQGLGCDEMLQGFAVAIKMGATKANFDSTVAIHPTSAEELVTL 1589 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 30/52 (58%), Gaps = 1/52 (2%) Frame = -2 Query 339 KVELTPVAIQAGRLLAQRLYAG-STVKCDYENVPTTVFTPLEYGACGLSEEK 389 V L VAI AGR LA RL+ G K DY N+PT VF+ G GL+E + Sbjct 3687 SVSLFTVAIAAGRKLAHRLFEGMQDSKLDYTNIPTVVFSHPPIGTVGLTEGR 3532 >PTFA01000127.1 Casuarius casuarius isolate B32419 scaffold_126, whole genome shotgun sequence Length=3114414 Score = 38.1 bits (87), Expect = 0.54, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Frame = +2 Query 285 NTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVP 327 + +++ IGR T+ +GLE +G+++++K G+IPV + QT +P Sbjct 483188 DVLLVCIGRRPFTKNLGLEDIGIELDKK-GRIPVNNRFQTKIP 483313 Lambda K H a alpha 0.319 0.138 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 148554429201 Database: genome.fa Posted date: Oct 19, 2018 9:06 AM Number of letters in database: 1,209,001,349 Number of sequences in database: 3,184 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40