TBLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: genome.fa 3,184 sequences; 1,209,001,349 total letters Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete Length=203 Score E Sequences producing significant alignments: (Bits) Value PTFA01000489.1 Casuarius casuarius isolate B32419 scaffold_488, ... 178 3e-50 PTFA01000490.1 Casuarius casuarius isolate B32419 scaffold_489, ... 170 3e-47 PTFA01000081.1 Casuarius casuarius isolate B32419 scaffold_80, w... 74.7 5e-14 PTFA01000055.1 Casuarius casuarius isolate B32419 scaffold_54, w... 70.9 9e-13 PTFA01000118.1 Casuarius casuarius isolate B32419 scaffold_117, ... 55.8 1e-07 PTFA01000256.1 Casuarius casuarius isolate B32419 scaffold_255, ... 53.9 5e-07 PTFA01000202.1 Casuarius casuarius isolate B32419 scaffold_201, ... 35.8 0.030 PTFA01000542.1 Casuarius casuarius isolate B32419 scaffold_541, ... 34.7 1.6 >PTFA01000489.1 Casuarius casuarius isolate B32419 scaffold_488, whole genome shotgun sequence Length=288360 Score = 178 bits (452), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 85/131 (65%), Positives = 102/131 (78%), Gaps = 1/131 (1%) Frame = +1 Query 71 LVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130 LV FPC F ENA NEEIL SL++VRPG G++PNF LFEKC+VNG AHPLF FL+ Sbjct 152440 LVFCLFPC-LFLS*ENATNEEILRSLEHVRPGNGYKPNFTLFEKCDVNGKDAHPLFTFLK 152616 Query 131 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEP 190 EALP P DD ++LMT+P+ I WSPV RND++WNFEKFL+GPDGVP +RYSR F+TI I+ Sbjct 152617 EALPFPHDDPSSLMTNPQYIIWSPVRRNDISWNFEKFLIGPDGVPFKRYSRHFETIKIQD 152796 Query 191 DIEALLSQGPS 201 DIE LL + P Sbjct 152797 DIELLLQKVPK 152829 Score = 99.4 bits (246), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 47/69 (68%), Positives = 54/69 (78%), Gaps = 0/69 (0%) Frame = +1 Query 16 VYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLG 75 + ARPL EP++L SL G+VLL+ NVASL GTT RD+ Q NELQ+R GPRGLVVLG Sbjct 151915 LAGLQARPLGAAEPLALDSLLGRVLLVSNVASL*GTTARDFVQFNELQQRYGPRGLVVLG 152094 Query 76 FPCNQFGHQ 84 FPCNQFGHQ Sbjct 152095 FPCNQFGHQ 152121 >PTFA01000490.1 Casuarius casuarius isolate B32419 scaffold_489, whole genome shotgun sequence Length=293072 Score = 170 bits (430), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 76/114 (67%), Positives = 90/114 (79%), Gaps = 0/114 (0%) Frame = -2 Query 84 QENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATAL 143 QEN NEEILNSLKYVRPGGGFEPNF LF+KC+VNG HP+FA+L+ LPAP+DDA L Sbjct 150301 QENCTNEEILNSLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYLKAHLPAPADDAVHL 150122 Query 144 MTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197 M +P+ + WSPV R D++WNFEKFLVGP+G P RRYS R T +EPDI+ LL Sbjct 150121 MAEPRFVVWSPVRRADISWNFEKFLVGPEGEPFRRYSPRMPTAQLEPDIQRLLK 149960 Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 47/71 (66%), Positives = 54/71 (76%), Gaps = 2/71 (3%) Frame = -2 Query 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVV 73 +S Y SA L G E V + RG+V+LIENVASL GTTVRDYTQ+N+LQ R PR LVV Sbjct 150706 KSFYDLSATSLQG-EKVDFNNFRGRVVLIENVASL*GTTVRDYTQLNQLQARY-PRRLVV 150533 Query 74 LGFPCNQFGHQ 84 LGFPCNQFG+Q Sbjct 150532 LGFPCNQFGYQ 150500 >PTFA01000081.1 Casuarius casuarius isolate B32419 scaffold_80, whole genome shotgun sequence Length=3960531 Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 5/91 (5%) Frame = +3 Query 39 VLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKY 98 V L+ NVAS +G T Y + +LQR LGP VL FPCNQFG QE N EI + + Sbjct 1168980 VSLVVNVASECGYTDSHYKALQQLQRDLGPYHFNVLAFPCNQFGQQEPDSNREIES---F 1169150 Query 99 VRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129 R G +F +F K V+GAGA P F +L Sbjct 1169151 ARKTYG--ASFPMFSKTAVSGAGAIPAFKYL 1169237 >PTFA01000055.1 Casuarius casuarius isolate B32419 scaffold_54, whole genome shotgun sequence Length=5338051 Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Frame = +1 Query 38 KVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97 K L+ NVAS + T ++Y + EL R GP VL FPCNQFG E + ++EI + K Sbjct 2037973 KATLVVNVASYCQHTDKNYIALQELHREFGPSHFTVLAFPCNQFGESEPSSSQEIESFAK 2038152 Query 98 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129 G + F +F K ++ G+ A P F FL Sbjct 2038153 -----GNYGVTFPVFHKIKILGSEAEPAFKFL 2038233 >PTFA01000118.1 Casuarius casuarius isolate B32419 scaffold_117, whole genome shotgun sequence Length=3204144 Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 23/49 (47%), Positives = 32/49 (65%), Gaps = 0/49 (0%) Frame = +1 Query 144 MTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI 192 +PK + W P+ +D+ WNFEKFLVGPDGVP+ R+ R ++ DI Sbjct 146674 FANPKNLFWEPLRNHDIKWNFEKFLVGPDGVPVMRWYHRTNIAVVKNDI 146820 Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 0/41 (0%) Frame = +3 Query 57 TQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97 ++N LQ LGP GLVVLGFP NQFG QE +N EIL +LK Sbjct 145986 AELNALQNELGPYGLVVLGFPSNQFGKQEPGQNSEILPALK 146108 Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 29/38 (76%), Gaps = 0/38 (0%) Frame = +3 Query 93 LNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130 L+ +YVRPGGGF PNF LF+K +VNGA +++FL+ Sbjct 146433 LSPCRYVRPGGGFVPNFQLFQKGDVNGAREQKVYSFLK 146546 >PTFA01000256.1 Casuarius casuarius isolate B32419 scaffold_255, whole genome shotgun sequence Length=1427201 Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 0/49 (0%) Frame = +3 Query 36 RGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 84 RG V +I NVAS G T +YTQ+ +L R RGL +L FPCNQFG Q Sbjct 735783 RGFVCIITNVASK*GKTDVNYTQLVDLYARYAERGLRILAFPCNQFGKQ 735929 >PTFA01000202.1 Casuarius casuarius isolate B32419 scaffold_201, whole genome shotgun sequence Length=1887227 Score = 35.8 bits (81), Expect(2) = 0.030, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 21/31 (68%), Gaps = 0/31 (0%) Frame = +2 Query 84 QENAKNEEILNSLKYVRPGGGFEPNFMLFEK 114 Q N +N +S Y+RPGGGF P+F+ F++ Sbjct 436550 QRNVRNCGYSSSYMYIRPGGGFFPHFVCFQR 436642 Score = 22.7 bits (47), Expect(2) = 0.030, Method: Compositional matrix adjust. Identities = 8/26 (31%), Positives = 16/26 (62%), Gaps = 0/26 (0%) Frame = +1 Query 133 LPAPSDDATALMTDPKLITWSPVCRN 158 LPAP A +++ +L+ W+ + R+ Sbjct 436762 LPAPYGSAKSILQREELVPWTNLGRS 436839 >PTFA01000542.1 Casuarius casuarius isolate B32419 scaffold_541, whole genome shotgun sequence Length=180124 Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 13/77 (17%) Frame = +2 Query 55 DYTQMNELQRRLGPRGLVVL--GF----PC---NQFGHQENAKNEEIL----NSLKYVRP 101 DY Q +L + LGP V L GF PC GH K+ ++ N LK+ RP Sbjct 49493 DYVQE*QLSKLLGPHMSVDLPSGFSSVIPCFTQQGEGHVHTLKDAGLVSVAKNQLKFDRP 49672 Query 102 GGGFEPNFMLFEKCEVN 118 GG + P + E C V Sbjct 49673 GGEWAPEWAQMENCPVQ 49723 Lambda K H a alpha 0.321 0.139 0.433 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33820210452 Database: genome.fa Posted date: Oct 19, 2018 9:06 AM Number of letters in database: 1,209,001,349 Number of sequences in database: 3,184 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40