------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 61300 - 61368 Found by: Infernal (score=34.13) Covels (score=25.0) Stem2 length = 9 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -24.94 ..(((((((.......(((((((((((((((...............))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ..({(((((---....{[[[(((((((((..........-----....)))))))))]]]}.....-.-.)))))}).. target UGCAGGGAC---AGAAUGAAGCCCUCAGCUGAAAGCUCU-----GGGUGCUGAGGGUGGAUGAGCU-G-AGUCCCAGAG **** ^^^ **** ------- SECIS element -- id:2 -- grade:C ---- Chromosome = your_sequence Strand = - Positions = 93373 - 93297 Found by: Infernal (score=12.04) Stem2 length = 7 Apical loop length = 15 Insertion in stem2 = 1, 0 Free Energy = -13.96 ..(((((((.......((((((((((.(((((...............))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc .(((((({((--(...([[(((((({.{({{(...............)}})}}))))))]]).....-.)))})))))). target UGCCAGGGGG--ACCUUGAGGGUUUCUUCCUGAAAGCAGGAGGGAGACUAGCCAAGCCUGAAGUCUC-CUCUGCCUGGCC **** ^^^ ****