------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 47027 - 46944 Found by: Infernal (score=27.65) Covels (score=29.54) Stem2 length = 11 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -15.14 ..(((((((........(((((((((((((((.................)))))))))))))))............))))))).. model uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc (((({((((........([[((((((((((((.................))))))))))))]])........-...))))})))) target UGCAAUUAAGCAGAUAAUGAAGUUGUGCUGGGAAUUCCUUCUUCCAGGAUCCAGUGUAACUGAAGUGCAGUG-UUAUUAAAUGCA **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = - Positions = 77767 - 77692 Found by: Infernal (score=10.36) Covels (score=7.28) Stem2 length = 7 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -5.43 ..(((((((........(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .({((((((((......([[((({((({({(.................)})})))})))]])..--.)-)))))))}). target UUGACUGUAGAAACAAAUGAAGUUGAGUAUUUUAACCUGGGUAGAGCUGCUUUUUCAUUGAAGG--CU-UUGCAGUGGC **** ^^ ****