------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 48708 - 48631 Found by: Infernal (score=39.85) Covels (score=33.1) Stem2 length = 11 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -32.23 ..(((((((.......(((((((((((((((.................))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ...(((((((--((..([[[(((((((((((.................)))))))))))]]]).....-)))))))))... target UAUUUGUGCU--UGAAUGAAGAGUGCAGCCUAAACCCAGGCUCUGGACAGGCUGCACUCGGAAGUGGG-CAAGCACAACGA **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = - Positions = 69793 - 69730 Found by: Infernal (score=11.03) Stem2 length = 9 Apical loop length = 8 Insertion in stem2 = 0, 0 Free Energy = -5.5 ..(((((((.......(((((((((((((((.................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..({(({((---....{[[(((((({((((------.....-----...))))}))))))]]}..--....))}))}).. target UCUAGUAGA---UUGAUGAGGCAUGAUUUU------CCUUU-----ACAAAAACCAUGUUGACUC--UUUCUCAACAAAU **** ^^ ****