_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-10
 Query name: gi|946672531|ref|XP_006129802.2| PREDICTED: selenoprotein K isoform X1 [Pelodiscus sinensis]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/573303344/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  51882        51900
 -Exon 2  49998        50088
 -Exon 3  48936        49016
 -Exon 4  48006        48096

 Redox box: no

Query   MVYISNG <---Intron---> QVLDTQSRAPWSLSFITDFFWGIADFVVLF <---Intron---> FQSIVQPNLRRRGYTSSSNSRYDDGRG <--
        ||||||| <   1793bp   > |||| ||/|||||||||||||||||||||| <   981bp    > |||/| |/|||||  |||||||||||| <  
Target  MVYISNG                QVLDNQSQAPWSLSFITDFFWGIADFVVLF                FQSLVHPDLRRRGCISSSNSRYDDGRG    
        agtatag                cgtgacacgctatttaagtttgaggtggtt                tcacgccgtaaagtatttatatgggag    
        ttatca                gattaaagaccggtcttcattggtcattttt                tagttacatgggggtcccacgaaaggg    
        gtctgc                aaggtcgtgttgtaataatccgcaattgtg                ccgctttatgagattatcacaatttaa     
                                                                                                            

Query   -Intron---> PPGNPRRRMGRINHGGGPSPPPMAGGGUGR
         839bp    > ||||||||||||||||||||||||||||||
Target              PPGNPRRRMGRINHGGGPSPPPMAGGGUGR
                    ccgacccaagcaacgggcacccaggggtga
                    ccgacgggtggtaagggcgccctcgggggg
                   gtaattctagtaatctatctaacgtaaaaag
                                               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 978 ; UGA-SECIS: 984

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 47027 - 46944
 Found by:  Infernal (score=27.65) Covels (score=29.54)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -15.14

         ..(((((((........(((((((((((((((.................)))))))))))))))............)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         (((({((((........([[((((((((((((.................))))))))))))]])........-...))))}))))
 target  UGCAAUUAAGCAGAUAAUGAAGUUGUGCUGGGAAUUCCUUCUUCCAGGAUCCAGUGUAACUGAAGUGCAGUG-UUAUUAAAUGCA
                          ****           ^^                          ****