_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-21
 Query name: gi|902887759|ref|XP_013033439.1| PREDICTED: 15 kDa selenoprotein [Anser cygnoides domesticus]
 Query range: 62-143  (total 143)

 Target: /data/www-rg/seblastian_results/661953264/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  83952        84018
 -Exon 2  93274        93323
 -Exon 3  96185        96313

 Redox box: no

Query   KLYAGAVLEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKLFRGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILKWNT
        /|||||/|||||||||||||||| <   9255bp   > |||||||||||||||| <   2861bp   > |||||||||||||||||||||||||||||
Target  QLYAGAILEVCGUKLGRFPQVQA                FVRSDKPKLFRGLQIK                YVRGSDPVLKLLDDNGNIAEELSILKWNT
        cctgggacggtgtatgatccgcg                tgaagacactagccaa                tgcgtgcgcaccggagaagggcaacataa
        atacgcttatgggatggtcata                cttggaacattggtata                atggcacttattaaagatcaatgttagac
        gctattctagtaaagagctatg                ttcgtcataacgagacg                cgtttttaaaggtctgcttaagcccagta
                    *                                                                                       

Query   DSVEEFLSEKLERL
        |||||||||||||/
Target  DSVEEFLSEKLERI
        gagggtcagacgca
        agtaattgaatagt
        tcaaacataaaaca
                      
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 580 ; UGA-SECIS: 787

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 96894 - 96964
 Found by:  Infernal (score=29.77) Covels (score=19.57)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -15.59

         ..(((((((.......(((((((((((((((...............))))))).))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccggc
         ..(((((((.--....{[[((((((((((.......---.........))))).)))))]]}..--..-.)))))))..
 target  UUGGUGCACA--UUAGUGAAGACUACAUAGAAAACC---UGUAAGGCAUGUGUAAGUCUGAUGU--CA-AGUGUACUUU
                         ****          ^^^                         ****