_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-21
 Query name: gi|946656370|ref|XP_006125033.2| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Pelodiscus sinensis] >gi|440919617|gb|AGC24782.1| glutathione peroxidase 4 [Pelodiscus sinensis]
 Query range: 1-170  (total 170)

 Target: /data/www-rg/seblastian_results/286759707/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  50000        50097
 -Exon 2  50651        50795
 -Exon 3  51523        51674
 -Exon 4  52048        52072
 -Exon 5  52761        52820
 -Exon 6  53397        53426

 Redox box: no

Query   MCAHAEDWLAAKSIYEFRATDIDGHEVSLDKYR <---Intron---> GLVCIIVNVASKUGKTAVNYTQLVDMYARLAERGLRILGFPCNQFGKQ <-
         || |/|| |||||||| | |||||/|||/||/ <   553bp    > | |||| ||||||||| |||||||||||| |||||||||||||||| | < 
Target  QCAQADDWRAAKSIYEFHAKDIDGHDVSLEKYK                GYVCIITNVASKUGKTNVNYTQLVDMYARYAERGLRILGFPCNQFGNQ   
        ctgcgggtcggatatgtcgagaggcggtcgata                gtgtaaaaggtatgaaagataccggatgatggagtcacgtctactgac   
        agcacaaggccactaatacaatagaatctaaaa                gatgttcatccaggacataacattatacgacaggtgttgtcgaatgaa   
        gcgggtcgatcacatacccacttccttcgagc                ggtccccctaacaaaatcacctgtctgccattggtaccgcccccgtacg   
                                                                     *                                      

Query   --Intron---> EPGDESQIKQFVASYGVKFDMFSKIEVNGNNAHPLWKWMKEQPKGRGLLGN <---Intron---> AIKWNFTK <---Intron-
          727bp    > |||||||||||||||||||||||||||||/||||||||||/|||||| ||| <   373bp    > |||||||| <   688bp  
Target               EPGDESQIKQFVASYGVKFDMFSKIEVNGDNAHPLWKWMKDQPKGRGTLGN                AIKWNFTK            
                     gcgggtcaactggatggatgataaaggaggagccctataagccagagacga                gaatataa            
                     acgaacataattcgagtatattgatatagaacactgagtaaacagggctga                ctagatca            
                     gtgtgtgcaattactgggtcgtcgagccgcccttcgaggatacaaaccga                taaagccag            
                                                                                                            

Query   --> FLIDREGQVVKRYSPMEDPY <---Intron---> LIEKDLPNYL
          > |||//|||||||||||/||| <   576bp    > /|||||| /|
Target      FLINKEGQVVKRYSPMDDPY                VIEKDLPAFL
            tcaaaggcggaatacaggct                gagagccgtc
            tttaaagattagagctaaca                ttaaatcctt
            cctcggcgcggaccagttct                gtggcgttcg
                                                          
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 73 ; UGA-SECIS: 445

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 53500 - 53572
 Found by:  Infernal (score=30.17) Covels (score=35.94)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -16.56

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({({(({(((.....([[{(({((((((((...............))))))))}))}]])----.)-))}))})}).
 target  UCCCACCCAGCCCCAAUGACGGCCUGCCUUAAAGCCAGCCUGCUGGUGAGGCAGACCCGAA----AG-CUUGGCGUGC
                         ****           ^^                        ****