_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-64
 Query name: gi|951038033|ref|XP_006270892.2| PREDICTED: glutathione peroxidase 2 [Alligator mississippiensis]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/467118378/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  49991        50212
 -Exon 2  51676        52023

 Redox box: no

Query   MTPIAKSFYDLSAITLQGEKVDFNNFRGRVVLIENVASLUGTTVRDYTQLNQLQARYPRRLVVLGFPCNQFGYQ <---Intron---> ENCTNEEILN
        |  | ||||||||  / ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| <   1463bp   > || |||||||
Target  MAHITKSFYDLSATDIHGEKVDFNTFRGRVVLIENVASLUATTVRDYTQLNQLQARYPRRLVVLGFPCNQFGYQ                ENSTNEEILN
        agcaaatttgcagagacggaggtaatcgcggtagaggtctgaagcgtaccacccgctccccggcgtctactgtc                gaaaaggaca
        tcatcactaatgccatagaatatactgggttttaatcctgccctgaacataatacgacggttttgtcgaatgaa                aagcaaatta
        gtcccgccccgccccccggggtccccgcggtgtgcgaccaccaggtccgccgggcgcggggcggcctccgtccg                gctctggccc
                                               *                                                            

Query   SLKYVRPGGGFEPNFTLFQKCQVNGQDTHPVFAYLKAHLPAPVDNPAALLTDPRFLVWSPVQRADLTWNFEKFLVGPEGEPFKRYSPKFQTSHVEPDIQR
        |||||||| |||||||||||||||||| |||||||||||| | | |/ // ||/|/|||||/| ||/||||||||||||||||||||||||  |||||||
Target  SLKYVRPGAGFEPNFTLFQKCQVNGQDVHPVFAYLKAHLPTPADEPSTIMNDPKFVVWSPVRRDDLSWNFEKFLVGPEGEPFKRYSPKFQTIAVEPDIQR
        acatgccgggtgcatactcatcgagcggccgtgtcagcccacgggctaaaagcatggtacgccggcttatgatcggcgggctactacatcaagggcgacc
        gtaatgcgcgtacatcttaagatagaatacttcatacatccccaacccttaacatttggctggaatcgataatttgcagactagagcatactctacatag
        cggcggcgcccgcccctcgacggcggcgccccccggccgccgtcgccccgcccgccggcgggcccccgccggcgggcgggccaccccgcgctccgcccgc
                                                                                                            

Query   LLKLAK
        ||||||
Target  LLKLAK
        ccacga
        ttatca
        ccgaca
              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 109 ; UGA-SECIS: 559

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 52133 - 52198
 Found by:  Infernal (score=29.4) Covels (score=27.1)
 Stem2 length = 11   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -30.4

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---(...([[{(((((((((((........-----..)))))))))))}]])----...)))))))...
 target  GUGCUUUAC---CAGGUGACAGCCCCCUUCUAAACCACA-----CGGGGAGGGGGCUCGAA----GGGGGUAAAGGCA
                         ****           ^^^                       ****