_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: e-164
 Query name: gi|946639193|ref|XP_006139700.2| PREDICTED: thyroxine 5-deiodinase isoform X1 [Pelodiscus sinensis] >gi|946639197|ref|XP_014427470.1| PREDICTED: thyroxine 5-deiodinase isoform X2 [Pelodiscus sinensis]
 Query range: 1-274  (total 274)

 Target: /data/www-rg/seblastian_results/348202181/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  49973        50797

 Redox box: no

Query   MLHSLGVHTLQLLTQAAACFLLLPRFLLTALMLWLLDFLCIRKKVLLMG-RVEEEGSPVQEPPPDDPPVCVSDSNRMFTLESLKAVWHGQKLDFFKSAHV
        ||||||||||||||| ||| || |||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||
Target  MLHSLGVHTLQLLTQVAACILLFPRFLLTALMLWLLDFLCIRKKVLLMGSRAEEEASPGQEPPPDDPPVCVSDSNRMFTLESLKAVWHGQKLDFFKSAHV
        acctcggcatcccacgggtacctcctccagcactccgtctaaaagccagaagggggacgcgcccggccgtgtgtacatacgtcaggtcgcacgttatgcg
        ttactgtactattcatccgttttcgtttcctttgttattgtgaattttgggcaaacgcgaacccaacctgtcacagttctactactgagaatattaccat
        gccccctccaggccgctccccgccccgccgggcgcgttcccgggggggccggggacctcagacgcccgctgcccccgccggcgacggcggggcccaaccg
                                                                                                            

Query   GSSAPNPEVIQLDGQKRLRILDYARGKRPLILNFGSCTUPPFMARLRSFQRLAAHFVDIADFLLVYIEEAHPSHCWVSSDAAYEIPKHQCLQDRLRAAQL
        ||||||||||||/|||/||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||/||||||||||||||||
Target  GSSAPNPEVIQLEGQKQLRILDYARGKRPLILNFGSCTUPPFMARLRSFQRLAAHFVDIADFLLVYIEEAHPSDGWVSSDAAYQIPKHQCLQDRLRAAQL
        gttgcacggaccggcaccaacgtgcgaaccacatgatatcctagccattcccggctggaggtccgtagggcctggtgatgggtcacacctccgacaggcc
        gccccacattatagaaatgttaacggagctttatgggcgccttcgtgctagtccattatcattttataacaccaggtgcaccaatcaaagtaagtgccat
        cctccccaccggagggacgcgcccacgacgcgctgcccacccgtcggccgcgtgcctcctccgggccagtcccccgccgcaccgccgcgccgcggggtgg
                                              *                                                             

Query   MQEGAPGCPLAVDTMDNASSAAYGAYFERLYIIQEEMVMYQGGRGPEGYKISELRSWLDQYKNRLQSPSTVVIQV
        ||/||||||||||||||||||||||/||||||||||/|||||||||/||||||||||||||| |||||||||| |
Target  MQQGAPGCPLAVDTMDNASSAAYGAFFERLYIIQEEVVMYQGGRGPDGYKISELRSWLDQYKTRLQSPSTVVIHV
        accggcgtccgggaagagtaggtggttgactaacggggatcggagcggtaatgccatcgctaacccacaaggacg
        taagccggctctactaaccgccagcttagtattaaatttaaggggcagaatcatgggtaaaacgtagcgctttat
        ggaggtcccgagccgcttcccctccctagccccggggggcgacaaacccgccacgcgccgcacgcgcccggcccg
                                                                                   
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 350 ; UGA-SECIS: 758

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49622 - 49539
 Found by:  Infernal (score=26.94) Covels (score=21.58)
 Stem2 length = 10   Apical loop length = 22   Insertion in stem2 = 0, 1
 Free Energy = -17.87

         ..(((((((.......(((((((((((((((....................)))))))).)))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccag-gcCuGAUGuu-u-uuucaugaccggc
         ((((((((((......{[[{((((((((((......................))))))).)))}]]}......-.-))))))))))
 target  UUCUAGUAUCGCUUGGUGACGACCGAUUUUGAAAUGGUUUUCAAAAUACCAGGGAAUCGAGUCCGAUGUUGUU-A-GAUACUAGAA
                         ****           ^^^                             ****