
genewise output
Score 943.61 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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eEFSec             4 RRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLG 
                     RR+NVNVGVLGHIDSGKTALARALSTT STAAFD+ PQSR RGITLDLG 
                     RRLNVNVGVLGHIDSGKTALARALSTTGSTAAFDRAPQSRARGITLDLG 
PKMU01005278.1:49973 aacagagggcgcagagaagcgcgcaaagtaggtgcgccacgcgaacgcg 
                     ggtatatgttgataggacctcgctgccgcccctagccaggcggtctatg 
                     gggtgcggcggcccccggggcggcccctccccccgcggcatgcccgcgc 


eEFSec            53 FSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIR 
                     FSC+ +PLP             P   P PGE  LQ+TLVDCPGHASLIR 
                     FSCLRIPLP-------------PHLGPGPGE--LQLTLVDCPGHASLIR 
PKMU01005278.1:50120 tttccaccc             cccgcgcgg  cccacggtcgcgtcac 
                     tcgtgtctc             catgcgcga  tatcttagcgaccttg 
                     ccccccggg             gtgcccccg  cgccggctgacccccg 


eEFSec           102 TIIG                          AQIIDLMMLVIDVTKGMQT 
                     TIIG                          AQIIDLMMLVIDVTKGMQT 
                     TIIG          G:G[ggt]        AQIIDLMMLVIDVTKGMQT 
PKMU01005278.1:50222 aaagGGTAAGGG  Intron 1   CAGGTgcaagtaacgaggaagaca 
                     cttg <1-----[50235:112379-1>  cattattttttatcagtac 
                     cctc                          cgtttgggccatgaagggt 


eEFSec           126 QSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENT 
                     QSAECLVIGQIACQK+VVVLNKIDLLPEGKRQAAI+KMTKKMQKTLENT 
                     QSAECLVIGQIACQKMVVVLNKIDLLPEGKRQAAIEKMTKKMQKTLENT 
PKMU01005278.1112439 ctggttgagcagtcaagggcaaagcccggaacggagaaaaaacaacgaa 
                     accagtttgatcgaatttttaatattcagagacctaatcaataactaac 
                     gaagcggtggcccggggatgcaacttagggaatctgggggagggtgata 


eEFSec           175                           FRGAPIIPVAAKPGGPEAPETEA 
                                               F+G PI  VAAKPGGPEAPET   
                                K:K[aag]       FQGCPIAAVAAKPGGPEAPETVN 
PKMU01005278.1112586 AAGTAAGTT  Intron 2   TAGGtcgtcagggggacggcggcgaga 
                       <2-----[112588:11816-2> taggctcctccacggcaccacta 
                                               cagttttttatgataaacagtgt 


eEFSec           199 PQGIPELIE                       LLTSQISIPTRDPSGPF 
                     P G+ ELIE                       +L SQ  +PTRDP GPF 
                     PLGVSELIE                       VLKSQAYLPTRDPMGPF 
PKMU01005278.1118232 ccggtgcagGTACATG  Intron 3   CAGgcatcgtccaagcagct 
                     ctgtcatta<0-----[118259:12211-0>ttacacatccgactgct 
                     aatttaatg                       cggtgtcgaaatcgacc 


eEFSec           225 LMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK            
                     LM++DHCFSIKGQGTVMTGT+LSGS+SLGD+VEIPALK            
                     LMAIDHCFSIKGQGTVMTGTVLSGSVSLGDNVEIPALK            
PKMU01005278.1122169 cagagctttaagcgagaagagctgtgacggaggacgca            
                     ttctaagtctagagcttcgcttcgctgtgaatatccta            
                     tgctcctcccgtacaggagttttcctcatttggttcgg            


eEFSec           263                        VVKKVKSMQMFHMPITSAMQGDRLGI 
                                            V KKVKSMQMFH P+T AMQGDR+GI 
                                            VTKKVKSMQMFHTPVTYAMQGDRVGI 
PKMU01005278.1122283 GTGAGTG  Intron 4   CAGgaaagatacatcacgatgacggagga 
                     <0-----[122283:15841-0>tcaatactattacctcactagagtgt 
                                            gagacatgggctttattcggtcaacc 


eEFSec           289 CVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHI 
                     CVTQFDPKLLERGL+C PESL T+HAA+IS++KI YFRG LQTKAKFHI 
                     CVTQFDPKLLERGLICTPESLQTIHAAVISLKKIQYFRGALQTKAKFHI 
PKMU01005278.1158489 tgactgcaccgcgcatacgtccaacgggattaaacttcggccaagatca 
                     gtcatacattaggttgccactactaccttctaataatggctacacatat 
                     tgcgttcggaaatgcttaatcgcatttcccggacgtcttttgcatgtcc 


eEFSec           338 TVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTP 
                     TVGHETVMG++MFFSPAP +F +EP+ ++F+F +EYL+QE+YLSK     
                     TVGHETVMGKVMFFSPAPADFSKEPLENAFDFEKEYLYQEEYLSKG--- 
PKMU01005278.1158636 aggcgagagagattacgcggtaagccgagtgtgagtctcggtttag    
                     ctgaacttgattttgccccatgaactaactataaaataaaaatcag    
                     atttaacgaaggtccacttcccaacggtttttagatttagacacgc    


eEFSec           387 AVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDA 
                         + E +K+  Q  EG  PRQQWAL+EFEKPVTCP+ CLVIGS+LD  
                     --SKSSEENKENDQTGEGQLPRQQWALLEFEKPVTCPKFCLVIGSKLDT 
PKMU01005278.1158774   tattggaagagcagggcccacctgtcgtgacgatcattcgagtacga 
                       caccaaaaaaaacgagatcgaagcttataactcgcatgtttgcatac 
                       aatggacgatcaaaaggtggaagtaggtagtctttatctgtccggtt 


eEFSec           436 DIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER    
                     DIH NTCRLAFHGILL G+ED+NY ++FLP+LKVYKLKHK G VER    
                     DIHGNTCRLAFHGILLQGVEDKNYVETFLPKLKVYKLKHKEGQVER    
PKMU01005278.1158915 gacgaatatgtcgatccggggaatggatccacagtatacaggcgga    
                     atagacggtctagtttagtaaaaatacttcatataataaaagatag    
                     tttacccgggctgagtaggacgcctgtttaggagcaggtgaaagag    


eEFSec           482                        AMDDYSVIGRSLFKKETNIQLFVGLK 
                                             +DDYSVIGRSLFKKETNIQ+F+GLK 
                                            VLDDYSVIGRSLFKKETNIQIFMGLK 
PKMU01005278.1159053 GTAAGCT  Intron 5   CAGgcggtagagctttaagaaacatagca 
                     <0-----[159053:17769-0>ttaaagttggcttaaacatatttgta 
                                            ggttttgtttagtgggtccgttggaa 


eEFSec           508 VHLSTGELGIIDSAFGQSGKFKIHIP                        
                     V LSTGE G+I+  FGQSGKFKI IP                        
                     VKLSTGEDGVIEGGFGQSGKFKIQIP          G:N[aat]      
PKMU01005278.1177769 gactagggggagggtgcagataacacAGTAAGTT  Intron 6      
                     tatccgaagttaggtgaggatatatc <1-----[177848:226819  
                     caataagtaaagcctggtcatacata                        


eEFSec           534      GLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLS 
                          GL P++K +LT   KK+++AG+G+  +++ES+ + + +Q V +S 
                          GLKPDTKVFLTVPSKKKSKAGKGDTAKEDESS-KVDSAQPVTVS 
PKMU01005278.1226817 CAGATgcacgaagtcagctaaataggaggagagggaa aggtgccgaga 
                     -1>  gtacacatttctccaaacacgagaccaaaagg ataccactctg 
                          acgataggtctcccggacgaggatacagtacc gtcacgtttcc 


eEFSec           579 LTFKRYVFDTHKRMVQS                                 
                     L FKRYVFDT K+M+QS                                 
                     LLFKRYVFDTQKKMIQS                                 
PKMU01005278.1226951 cctaatgtgacaaaact                                 
                     tttagattacaaattac                                 
                     tctaacctcaggagtgt                                 


//
Making a G in phase 1 intron
Making a K in phase 2 intron
Making a N in phase 1 intron
>PKMU01005278.1:subseq(575531,227858).pep
RRLNVNVGVLGHIDSGKTALARALSTTGSTAAFDRAPQSRARGITLDLGFSCLRIPLPPH
LGPGPGELQLTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIAC
QKMVVVLNKIDLLPEGKRQAAIEKMTKKMQKTLENTKFQGCPIAAVAAKPGGPEAPETVN
PLGVSELIEVLKSQAYLPTRDPMGPFLMAIDHCFSIKGQGTVMTGTVLSGSVSLGDNVEI
PALKVTKKVKSMQMFHTPVTYAMQGDRVGICVTQFDPKLLERGLICTPESLQTIHAAVIS
LKKIQYFRGALQTKAKFHITVGHETVMGKVMFFSPAPADFSKEPLENAFDFEKEYLYQEE
YLSKGSKSSEENKENDQTGEGQLPRQQWALLEFEKPVTCPKFCLVIGSKLDTDIHGNTCR
LAFHGILLQGVEDKNYVETFLPKLKVYKLKHKEGQVERVLDDYSVIGRSLFKKETNIQIF
MGLKVKLSTGEDGVIEGGFGQSGKFKIQIPNGLKPDTKVFLTVPSKKKSKAGKGDTAKED
ESSKVDSAQPVTVSLLFKRYVFDTQKKMIQS
//
>PKMU01005278.1:subseq(575531,227858).[49973:227001].sp
AGGAGGCTGAATGTGAACGTGGGGGTCCTGGGGCACATCGACAGCGGCAAGACGGCGCTG
GCCCGGGCGCTCAGCACCACCGGTTCCACCGCCGCCTTCGACCGGGCCCCGCAGAGCCGA
GCTCGGGGCATCACCCTGGACCTGGGCTTCTCCTGCCTCCGCATCCCGCTGCCGCCGCAT
CTGGGCCCCGGCCCCGGCGAGCTCCAGCTCACCCTGGTGGACTGTCCGGGACACGCCTCC
CTCATCCGGACCATCATTGGCGGTGCCCAGATTATTGATTTGATGATGCTCGTCATAGAT
GTGACAAAAGGGATGCAGACTCAGTCAGCAGAGTGCTTGGTGATTGGGCAGATCGCCTGC
CAGAAGATGGTGGTAGTTCTGAACAAAATAGACCTTCTTCCAGAGGGGAAGAGACAAGCT
GCCATTGAGAAGATGACGAAGAAAATGCAGAAGACTCTGGAAAATACAAAGTTCCAAGGG
TGTCCTATTGCTGCTGTTGCAGCTAAGCCAGGTGGACCAGAAGCCCCAGAGACTGTGAAT
CCACTAGGTGTTTCTGAACTAATTGAGGTCCTGAAGTCTCAGGCTTACCTGCCAACAAGA
GATCCCATGGGACCCTTCCTTATGGCCATTGACCACTGTTTCTCCATCAAGGGTCAAGGC
ACAGTGATGACAGGGACTGTTCTTTCTGGCTCCGTTAGCCTAGGTGATAATGTGGAGATT
CCTGCCCTGAAGGTGACAAAGAAAGTCAAATCTATGCAGATGTTCCATACTCCTGTAACT
TATGCCATGCAGGGTGACAGAGTAGGCATCTGTGTGACCCAGTTTGATCCCAAGCTGCTA
GAACGAGGTCTGATCTGTACTCCAGAATCTCTCCAGACCATACATGCTGCTGTCATCTCC
TTGAAGAAAATCCAGTATTTCCGTGGTGCTCTTCAGACCAAAGCTAAGTTTCACATCACA
GTTGGTCATGAAACAGTCATGGGAAAAGTGATGTTTTTCAGCCCAGCCCCTGCTGACTTC
AGCAAAGAACCCCTGGAGAATGCTTTTGATTTTGAAAAGGAATATCTTTATCAAGAGGAA
TACTTATCCAAGGGCTCAAAATCTTCGGAGGAAAACAAGGAAAATGACCAAACAGGAGAA
GGGCAGCTTCCGAGGCAACAATGGGCTTTACTGGAGTTTGAAAAGCCTGTCACTTGTCCT
AAATTTTGCCTTGTGATTGGCTCCAAGCTGGATACTGATATTCATGGAAACACCTGCAGG
TTGGCGTTCCATGGGATATTGCTTCAAGGGGTGGAAGACAAGAACTACGTTGAGACTTTT
CTTCCAAAGCTGAAAGTGTACAAATTGAAGCATAAGGAAGGACAAGTGGAAAGGGTGCTG
GATGATTATAGTGTGATTGGTCGTTCATTGTTTAAGAAGGAGACTAACATCCAGATTTTT
ATGGGGCTAAAAGTCAAACTATCTACAGGAGAGGATGGAGTAATAGAGGGCGGCTTTGGG
CAGAGTGGCAAATTTAAAATCCAAATTCCAAATGGACTCAAGCCAGATACAAAGGTGTTT
CTCACTGTCCCCTCCAAGAAGAAATCCAAGGCAGGGAAGGGAGATACAGCCAAAGAGGAT
GAAAGCAGCAAGGTTGACTCAGCCCAGCCTGTTACTGTCAGCCTTCTCTTTAAAAGATAC
GTCTTTGACACACAGAAGAAAATGATTCAGTCT
//
PKMU01005278.1:subseq(575531,227858)	GeneWise	match	49973	227001	960.59	+	.	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	cds	49973	50234	0.00	+	0	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	intron	50235	112379	0.00	+	.	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	cds	112380	112587	0.00	+	2	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	intron	112588	118161	0.00	+	.	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	cds	118162	118258	0.00	+	1	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	intron	118259	122117	0.00	+	.	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	cds	122118	122282	0.00	+	0	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	intron	122283	158410	0.00	+	.	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	cds	158411	159052	0.00	+	0	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	intron	159053	177690	0.00	+	.	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	cds	177691	177847	0.00	+	0	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	intron	177848	226819	0.00	+	.	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
PKMU01005278.1:subseq(575531,227858)	GeneWise	cds	226820	227001	0.00	+	2	PKMU01005278.1:subseq(575531,227858)-genewise-prediction-1
//
