
genewise output
Score 623.15 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

TR2               36 GQRDYDLLVVGGGSGGLACAKE                          A 
                     G+ +YDLLV+GGGSGGLACAKE                          A 
                     GKNEYDLLVIGGGSGGLACAKE          A:A[gct]        A 
PKMU01010066.1-95505 gaagtgccgagggtggcgtgagGGTTTGGA  Intron 1   AAGCTg 
                     gaaaaattttgggcggtcgcaa <1-----[95438:94879]-1>  c 
                     gatgtttggttattactttaaa                          t 


TR2               60 QLGRKVAVVDYVEPSPQ                          TRWGLG 
                     Q G+KVAV+DYVEPSP+                          T+WGLG 
                     QFGKKVAVLDYVEPSPK          G:G[gga]        TKWGLG 
PKMU01010066.1-94873 ctgaagggcgtggctcaGGTATGAA  Intron 2   TAGGAaatgcg 
                     atgaatcttaataccca <1-----[94821:94233]-1>  caggtg 
                     gtagggtttttggtata                          cagatt 


TR2               84 GTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHD         
                     GTCVNVGCIPKKLMHQAALLG  ++DA +YGW ++ PV HD         
                     GTCVNVGCIPKKLMHQAALLGSALKDAQHYGWNISHPVRHD         
PKMU01010066.1-94212 gatgaggtacaacaccggctgagcaggcctgtaatccgccg         
                     gcgtatggtcaattaaccttggctaacaaaggatcactgaa         
                     cttgctccttagtgtaattagcttatcattcgtaccttctc         


TR2              125                           RKMAEAVQNHVKSLNWGHRVQLQ 
                                                 MAEA+QN+VKSLNWGHRVQLQ 
                                W:W[tgg]       PVMAEAIQNYVKSLNWGHRVQLQ 
PKMU01010066.1-94089 TGGTAAAGA  Intron 3   TAGGcgagggacatgattatgcagctc 
                       <2-----[94087:93760]-2> cttcactaaatactaggagtata 
                                               tggaactattcacgcgacaggag 


TR2              149 D                          KVKYFNIKASFVDEHTVCGVAK 
                     D                          KVKYFN+  S++D HTV G+   
                     D           R:K[aaa]       KVKYFNLTGSLMDAHTVRGLTN 
PKMU01010066.1-93689 gAAGTAAATG  Intron 4   CAGAagattacagataggcagcgtaa 
                     a  <2-----[93684:92022]-2> ataatatcggttacactggtca 
                     c                          aggtcccactggtacacttgat 


TR2              173 GGKE                       ILLSADHIIIATGGRPRYPTH  
                      GKE                        +++A++I+IA GGRP+YP H  
                     AGKE                       TIITAENIVIAAGGRPKYPAH  
PKMU01010066.1-91954 ggagGTGAGCT  Intron 5   CAGaaaaggaagaggggacatcgc  
                     cgaa<0-----[91942:90991]-0>cttccaatttccgggcaacca  
                     atag                       tcttaaccctctaggaattat  


TR2              198                        IEGALEYGITSDDIFWLKESPGK    
                                            I GALEYGITSDDIFWLKESPGK    
                                            IAGALEYGITSDDIFWLKESPGK    
PKMU01010066.1-90927 GTAAGTC  Intron 6   TAGagggtgtgaaaggatttagtcga    
                     <0-----[90927:87726]-0>tcgctaagtcgaattgtaaccga    
                                            tatagatatatttacggaattaa    


TR2              221                           LVVGAS                  
                                               LVVGAS                  
                                T:T[acg]       LVVGAS                  
PKMU01010066.1-87656 ACGTAAGAC  Intron 7   CAGGtgggga                  
                       <2-----[87654:76631]-2> tttgcg                  
                                               ggtacc                  


TR2              228                           VALECAGFLTGIGLDTTIMMRSI 
                                               V+LECAGFLTGIG DTT+M+RSI 
                               Y:Y[tat]        VSLECAGFLTGIGQDTTVMVRSI 
PKMU01010066.1-76611 TGTATCCT  Intron 8   AAGATgtcgtggtcagagcgaagagaaa 
                      <1-----[76610:76219]-1>  tctagcgttcgtgaacctttggt 
                                               gctgtcttcactagtcgcgcatc 


TR2              252 PLRGFDQ                       QMSSMVIEHMASHGTRFLR 
                     PLRGFDQ                       QMS +V ++M S GTRFL+ 
                     PLRGFDQ                       QMSFLVTDYMESCGTRFLK 
PKMU01010066.1-76147 cccgtgcGTAACCA  Intron 9   CAGcatttgagtagttgaatta 
                     ctggtaa<0-----[76126:73501]-0>atctttcaatacggcgtta 
                     atagttg                       agccaattcgagttaatag 


TR2              278 GCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAI           
                      C PS+V +L  G+LQVTW+ + +GKE+   FDTV+WA+           
                     KCTPSKVEKLKSGKLQVTWKHADSGKEEMDDFDTVMWAV           
PKMU01010066.1-73443 atacaaggacaagaccgatacggtgaggaggtgagatgg           
                     agccgataataggatatcgaacacgaaataatacttgct           
                     accatatagggtcagatcgattcacaaagtctcagggaa           


TR2              317                           RVPDTRSLNLEKAGVDTSPDTQK 
                                               R PD ++LNLE  GV  S +T K 
                               G:G[ggc]        RAPDAKTLNLETIGVKISSETGK 
PKMU01010066.1-73326 GGTAAATT  Intron 10  AAGGCcgcggaacatgaaggaaatgaga 
                      <1-----[73325:60484]-1>  gccacactatactgtatgcacga 
                                               aatctatgtggatggatctatag 


TR2              341 ILVDSREATSVPHIYAIGDVVE                       GRPE 
                     I+VD+ EATSVPHIYAIGD+ E                       GRPE 
                     IIVDASEATSVPHIYAIGDITE                       GRPE 
PKMU01010066.1-60412 aagggaggatgccatgaggaagGTACAAT  Intron 11  CAGgccg 
                     tttacgaccctcatactgatca<0-----[60346:54419]-0>ggca 
                     ctttccatttttcttatacaag                       gcta 


TR2              367 LTPIAIMAGRLLVQRLFGGSSDLMDYDN                      
                     LTP AI AG+LL QRLFG SS+LMDYDN                      
                     LTPTAIAAGKLLAQRLFGQSSELMDYDN                      
PKMU01010066.1-54406 cacagagggaccgccctgcttgtagtgaGTGAGTT  Intron 12    
                     tcccctccgattcagttgaccattaaaa<0-----[54322:54062]  
                     ggtggataagggtatgtcgtaaggttct                      


TR2              395    VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE                
                        VPTTVFTPLEYGCVGLSEE+AV  +G +++E                
                        VPTTVFTPLEYGCVGLSEEKAVEHYGLDNIE                
PKMU01010066.1-54064 CAGgcaagtaccgtgtggctggagggctgcgaag                
                     -0>tcccttcctaaggtgtcaaactaaagtaata                
                        actatcttgacttaagaaagagattagtcag                


TR2              426                        VYHAHYKPLEFTVAGRDASQCYVK   
                                            VYHA+YKPLEFTVA RDA+QCY+K   
                                            VYHAYYKPLEFTVAERDATQCYIK   
PKMU01010066.1-53968 GTATGAA  Intron 13  CAGgtcgttactgtagggaggacttaa   
                     <0-----[53968:52061]-0>taacaaactatctcagaccagata   
                                            actattatgatagtaatatgtcaa   


TR2              450                        MVCLREPPQLVLGLHFLGPNAGEVTQ 
                                            MVCLR+  Q +LGLHF+GPNAGEV Q 
                                            MVCLRKKEQRILGLHFIGPNAGEVIQ 
PKMU01010066.1-51988 GTAAGTG  Intron 14  CAGagtccaagccacgcctagcaggggac 
                     <0-----[51988:50099]-0>ttgtgaaaagttgtattgcacgatta 
                                            gacgaaagggctcttctaatatagta 


TR2              476 GFALGI                          CGASYAQVMRTVGIHPT 
                     GFALG+                          CGA+YAQ+M+TVGIHPT 
                     GFALGM           K:K[aaa]       CGATYAQMMKTVGIHPT 
PKMU01010066.1-50020 gtgcgaAAGTAAGTA  Intron 15  TAGAtggatgcaaaaggacca 
                     gtctgt  <2-----[50000:47257]-2> ggccacattactgtacc 
                     atttag                          tctgtgggggatctctc 


TR2              500 CSEEVVKLRISKRSGLDPTVTGC                           
                     C+EEV KLRI+KRSGLD  VTGC                           
                     CAEEVTKLRITKRSGLDAKVTGC                           
PKMU01010066.1-47204 tggggaatcaaactgtggagagt                           
                     gcaatcatgtcagcgtacatcgg                           
                     ttgaacgatcagcttgtagtttc                           


//
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a W in phase 2 intron
Making a K in phase 2 intron
Making a T in phase 2 intron
Making a Y in phase 1 intron
Making a G in phase 1 intron
Making a K in phase 2 intron
>PKMU01010066.1:subseq(22487,144882).pep
GKNEYDLLVIGGGSGGLACAKEAAQFGKKVAVLDYVEPSPKGTKWGLGGTCVNVGCIPKK
LMHQAALLGSALKDAQHYGWNISHPVRHDWPVMAEAIQNYVKSLNWGHRVQLQDKKVKYF
NLTGSLMDAHTVRGLTNAGKETIITAENIVIAAGGRPKYPAHIAGALEYGITSDDIFWLK
ESPGKTLVVGASYVSLECAGFLTGIGQDTTVMVRSIPLRGFDQQMSFLVTDYMESCGTRF
LKKCTPSKVEKLKSGKLQVTWKHADSGKEEMDDFDTVMWAVGRAPDAKTLNLETIGVKIS
SETGKIIVDASEATSVPHIYAIGDITEGRPELTPTAIAAGKLLAQRLFGQSSELMDYDNV
PTTVFTPLEYGCVGLSEEKAVEHYGLDNIEVYHAYYKPLEFTVAERDATQCYIKMVCLRK
KEQRILGLHFIGPNAGEVIQGFALGMKCGATYAQMMKTVGIHPTCAEEVTKLRITKRSGL
DAKVTGC
//
>PKMU01010066.1:subseq(22487,144882).[95505:47134].sp
GGGAAAAATGAGTATGATCTTCTGGTGATTGGTGGAGGTTCTGGAGGCCTTGCTTGTGCA
AAAGAAGCTGCTCAGTTTGGAAAGAAGGTGGCTGTTCTTGATTATGTGGAGCCTTCACCT
AAAGGAACCAAATGGGGACTTGGTGGCACTTGTGTGAACGTTGGCTGCATTCCTAAAAAG
CTTATGCATCAAGCAGCTCTTTTAGGGAGCGCTCTTAAAGATGCCCAACATTATGGCTGG
AATATATCCCACCCTGTTCGCCATGACTGGCCTGTGATGGCAGAAGCCATTCAAAATTAT
GTCAAATCCTTGAACTGGGGACACAGAGTGCAGTTACAGGACAAAAAAGTGAAGTATTTC
AACCTCACAGGCAGTTTGATGGATGCACACACAGTCCGTGGTTTGACAAATGCAGGTAAA
GAGACTATCATTACTGCAGAAAACATCGTCATTGCCGCTGGAGGGAGGCCAAAATATCCT
GCACATATTGCAGGTGCATTGGAATATGGAATTACAAGTGATGATATATTCTGGTTGAAA
GAATCTCCTGGAAAAACGTTGGTGGTTGGAGCCAGCTATGTGTCCCTTGAGTGTGCCGGT
TTTCTCACAGGCATTGGACAGGATACCACGGTCATGGTCAGAAGTATCCCACTTCGAGGG
TTTGATCAGCAAATGTCCTTCTTAGTAACTGATTACATGGAATCGTGTGGTACAAGATTT
TTAAAGAAATGCACCCCAAGTAAAGTTGAAAAGCTGAAGAGTGGCAAACTGCAAGTTACC
TGGAAACATGCTGACTCAGGCAAAGAAGAAATGGATGACTTTGACACAGTGATGTGGGCA
GTAGGCCGAGCACCTGACGCTAAAACTCTGAATTTGGAGACAATTGGGGTGAAAATTAGC
TCTGAAACTGGAAAGATCATTGTTGATGCCAGCGAAGCTACTTCTGTTCCTCACATTTAT
GCAATTGGAGACATAACAGAGGGGCGCCCTGAACTGACGCCTACGGCGATAGCTGCAGGA
AAGCTGCTGGCTCAACGTCTGTTTGGCCAGTCTTCAGAATTGATGGATTATGACAATGTA
CCCACTACAGTTTTCACTCCTCTGGAATACGGTTGTGTAGGACTGTCAGAAGAAAAGGCA
GTGGAACATTATGGACTGGATAACATAGAGGTATACCATGCATATTATAAACCTTTGGAA
TTTACAGTGGCTGAAAGAGATGCAACTCAGTGTTACATAAAAATGGTATGCCTGCGAAAA
AAAGAGCAGCGGATCCTTGGCCTTCATTTCATTGGACCAAATGCAGGTGAAGTGATTCAA
GGATTTGCTCTTGGAATGAAATGTGGCGCTACGTATGCGCAGATGATGAAGACAGTTGGC
ATTCACCCTACCTGTGCTGAGGAAGTAACCAAGTTACGTATCACAAAGCGCTCTGGTTTG
GATGCAAAGGTTACTGGTTGC
//
PKMU01010066.1:subseq(22487,144882)	GeneWise	match	95505	47136	623.15	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	95505	95439	0.00	-	0	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	95438	94879	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	94878	94822	0.00	-	2	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	94821	94233	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	94232	94088	0.00	-	2	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	94087	93760	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	93759	93685	0.00	-	1	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	93684	92022	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	92021	91943	0.00	-	1	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	91942	90991	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	90990	90928	0.00	-	0	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	90927	87726	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	87725	87655	0.00	-	0	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	87654	76631	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	76630	76611	0.00	-	1	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	76610	76219	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	76218	76127	0.00	-	2	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	76126	73501	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	73500	73326	0.00	-	0	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	73325	60484	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	60483	60347	0.00	-	2	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	60346	54419	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	54418	54323	0.00	-	0	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	54322	54062	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	54061	53969	0.00	-	0	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	53968	52061	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	52060	51989	0.00	-	0	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	51988	50099	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	50098	50001	0.00	-	0	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	intron	50000	47257	0.00	-	.	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
PKMU01010066.1:subseq(22487,144882)	GeneWise	cds	47256	47136	0.00	-	1	PKMU01010066.1:subseq(22487,144882)-genewise-prediction-1
//
